Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26318 | 3' | -54.9 | NC_005345.2 | + | 31236 | 0.69 | 0.521629 |
Target: 5'- uGUACGgcgggUCCGGGGUcgggugcgcacucgGGUgcgcgggugcggGGGCGGGuGCg -3' miRNA: 3'- -CGUGUa----AGGCCCCA--------------UCA------------UCCGCUC-CG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 31448 | 0.73 | 0.34116 |
Target: 5'- aGCGCGggugcgaggcgCCGGGGUGcgGGuGUGAGGCg -3' miRNA: 3'- -CGUGUaa---------GGCCCCAUcaUC-CGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 32810 | 0.72 | 0.367528 |
Target: 5'- gGCGCGUUCCGcgaggcacucGGGaagcAGUGGGCcgaguucGAGGCg -3' miRNA: 3'- -CGUGUAAGGC----------CCCa---UCAUCCG-------CUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 32991 | 0.78 | 0.152103 |
Target: 5'- gGCGCAggcggCCGGGGUGGcggGGGCGucgacgaucGGGCu -3' miRNA: 3'- -CGUGUaa---GGCCCCAUCa--UCCGC---------UCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 33360 | 0.7 | 0.452615 |
Target: 5'- gGCGCGaga-GGGGUGG-GGGCGGuGGCg -3' miRNA: 3'- -CGUGUaaggCCCCAUCaUCCGCU-CCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 33703 | 0.68 | 0.612031 |
Target: 5'- -aGCGgcUCGGGGccGUcgcGGGCGAGGUg -3' miRNA: 3'- cgUGUaaGGCCCCauCA---UCCGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 34896 | 0.71 | 0.413859 |
Target: 5'- aCACGUUCCGGGGgaucGUgcAGGCagcguGGGCc -3' miRNA: 3'- cGUGUAAGGCCCCau--CA--UCCGc----UCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 35090 | 0.79 | 0.136072 |
Target: 5'- uGCAgGUUCuCGGcGGUGGUgcGGGCGuGGCg -3' miRNA: 3'- -CGUgUAAG-GCC-CCAUCA--UCCGCuCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 36068 | 0.67 | 0.645264 |
Target: 5'- cGCGCAggucCCGGGGaAGaugcucGGCG-GGCu -3' miRNA: 3'- -CGUGUaa--GGCCCCaUCau----CCGCuCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 36201 | 0.69 | 0.513156 |
Target: 5'- uGCGCGUcggacaCGGGGUaccucuucugucgGGUacGGGCGAGGg -3' miRNA: 3'- -CGUGUAag----GCCCCA-------------UCA--UCCGCUCCg -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 39033 | 0.71 | 0.395263 |
Target: 5'- uGCGCGUcUCCGGGaaccggccGGUGGGCGcuacgcAGGCg -3' miRNA: 3'- -CGUGUA-AGGCCCca------UCAUCCGC------UCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 42076 | 0.66 | 0.689353 |
Target: 5'- uGCAC-UUCCGGGccucggccgcGUAGUccGGCcGGGCc -3' miRNA: 3'- -CGUGuAAGGCCC----------CAUCAu-CCGcUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 45468 | 0.69 | 0.546277 |
Target: 5'- -gACGgcggCCGGGGUGGgcaugucGGCGaAGGUg -3' miRNA: 3'- cgUGUaa--GGCCCCAUCau-----CCGC-UCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 48355 | 0.67 | 0.623104 |
Target: 5'- aCACA--CCGGucuccGGUG--GGGCGAGGCg -3' miRNA: 3'- cGUGUaaGGCC-----CCAUcaUCCGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 48843 | 0.69 | 0.524821 |
Target: 5'- cGCcCcUUCCGGGG-----GGCGGGGCg -3' miRNA: 3'- -CGuGuAAGGCCCCaucauCCGCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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