Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26318 | 3' | -54.9 | NC_005345.2 | + | 6528 | 0.74 | 0.288219 |
Target: 5'- gGCACGgggCGGGGcg--GGGCGGGGCg -3' miRNA: 3'- -CGUGUaagGCCCCaucaUCCGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 31236 | 0.69 | 0.521629 |
Target: 5'- uGUACGgcgggUCCGGGGUcgggugcgcacucgGGUgcgcgggugcggGGGCGGGuGCg -3' miRNA: 3'- -CGUGUa----AGGCCCCA--------------UCA------------UCCGCUC-CG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 36201 | 0.69 | 0.513156 |
Target: 5'- uGCGCGUcggacaCGGGGUaccucuucugucgGGUacGGGCGAGGg -3' miRNA: 3'- -CGUGUAag----GCCCCA-------------UCA--UCCGCUCCg -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 28672 | 0.69 | 0.503692 |
Target: 5'- aCACgg-UCGGGGccacAGGCGAGGCg -3' miRNA: 3'- cGUGuaaGGCCCCaucaUCCGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 5227 | 0.69 | 0.502645 |
Target: 5'- aCACGccgUCGGGGUgcccgcgguacacGGUGGGCGugacGGGCg -3' miRNA: 3'- cGUGUaa-GGCCCCA-------------UCAUCCGC----UCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 33360 | 0.7 | 0.452615 |
Target: 5'- gGCGCGaga-GGGGUGG-GGGCGGuGGCg -3' miRNA: 3'- -CGUGUaaggCCCCAUCaUCCGCU-CCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 12675 | 0.71 | 0.432985 |
Target: 5'- cGUACccgCCGGgucGGUuGUAGGCcGAGGCg -3' miRNA: 3'- -CGUGuaaGGCC---CCAuCAUCCG-CUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 16205 | 0.72 | 0.377215 |
Target: 5'- cGC-CGUgcUCCGucaGGaGGUGGGCGAGGCc -3' miRNA: 3'- -CGuGUA--AGGCc--CCaUCAUCCGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 31448 | 0.73 | 0.34116 |
Target: 5'- aGCGCGggugcgaggcgCCGGGGUGcgGGuGUGAGGCg -3' miRNA: 3'- -CGUGUaa---------GGCCCCAUcaUC-CGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 45468 | 0.69 | 0.546277 |
Target: 5'- -gACGgcggCCGGGGUGGgcaugucGGCGaAGGUg -3' miRNA: 3'- cgUGUaa--GGCCCCAUCau-----CCGC-UCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 30872 | 0.68 | 0.568007 |
Target: 5'- cGCGCGggugcUCCGGGu--GcGGGCGAcGGCg -3' miRNA: 3'- -CGUGUa----AGGCCCcauCaUCCGCU-CCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 28853 | 0.68 | 0.589947 |
Target: 5'- cCGCAgucgUCCGGGGgcucuucGGCG-GGCa -3' miRNA: 3'- cGUGUa---AGGCCCCaucau--CCGCuCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 7344 | 0.66 | 0.708944 |
Target: 5'- uGCGCAagggucucgacgUCCGGGGc-GUcGGUGAGuGCa -3' miRNA: 3'- -CGUGUa-----------AGGCCCCauCAuCCGCUC-CG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 10536 | 0.66 | 0.700263 |
Target: 5'- cGCGCAUgaccugUCCGGcGGUGGc---CGAGGUa -3' miRNA: 3'- -CGUGUA------AGGCC-CCAUCauccGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 42076 | 0.66 | 0.689353 |
Target: 5'- uGCAC-UUCCGGGccucggccgcGUAGUccGGCcGGGCc -3' miRNA: 3'- -CGUGuAAGGCCC----------CAUCAu-CCGcUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 29857 | 0.67 | 0.667375 |
Target: 5'- cGCACuuccccUUCgCGuGGaGGUGGGCGAGGa -3' miRNA: 3'- -CGUGu-----AAG-GCcCCaUCAUCCGCUCCg -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 27958 | 0.67 | 0.656331 |
Target: 5'- aGCGCGUgaacccgaaCGGcGGUGcgccGUcgacGGGCGGGGCg -3' miRNA: 3'- -CGUGUAag-------GCC-CCAU----CA----UCCGCUCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 10134 | 0.67 | 0.634185 |
Target: 5'- cGCGCAgcagccaccagUUCGGGGUGGggaUGGGCGcAGacGCg -3' miRNA: 3'- -CGUGUa----------AGGCCCCAUC---AUCCGC-UC--CG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 16054 | 0.67 | 0.634185 |
Target: 5'- aGCGCGaUCCGGGuccgGGcGGuGCGuGGCa -3' miRNA: 3'- -CGUGUaAGGCCCca--UCaUC-CGCuCCG- -5' |
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26318 | 3' | -54.9 | NC_005345.2 | + | 48355 | 0.67 | 0.623104 |
Target: 5'- aCACA--CCGGucuccGGUG--GGGCGAGGCg -3' miRNA: 3'- cGUGUaaGGCC-----CCAUcaUCCGCUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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