miRNA display CGI


Results 41 - 53 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26319 3' -62.1 NC_005345.2 + 33477 0.67 0.281047
Target:  5'- -aGGUCGgGCCCGGUGUgucaCCACcgggcccGGUCg -3'
miRNA:   3'- gcCCAGCgCGGGCCGUA----GGUGu------CCAG- -5'
26319 3' -62.1 NC_005345.2 + 36378 0.66 0.372583
Target:  5'- gCGGG-CGCGCUCcGCggCCGCGGcGUg -3'
miRNA:   3'- -GCCCaGCGCGGGcCGuaGGUGUC-CAg -5'
26319 3' -62.1 NC_005345.2 + 37716 0.68 0.267648
Target:  5'- gCGGGaUCGCGCUgCGGCGcggcgCCGgCuGGUCg -3'
miRNA:   3'- -GCCC-AGCGCGG-GCCGUa----GGU-GuCCAG- -5'
26319 3' -62.1 NC_005345.2 + 38284 0.66 0.364227
Target:  5'- aCGGGaCGCGCCgcgugCGGCAguccgcccaCCGCAGcUCg -3'
miRNA:   3'- -GCCCaGCGCGG-----GCCGUa--------GGUGUCcAG- -5'
26319 3' -62.1 NC_005345.2 + 39543 0.67 0.287943
Target:  5'- -aGGUCGUGCaCCGGCc-CCGCGgccGGUCc -3'
miRNA:   3'- gcCCAGCGCG-GGCCGuaGGUGU---CCAG- -5'
26319 3' -62.1 NC_005345.2 + 39789 0.66 0.356001
Target:  5'- aGuGGUCGaGCCCGGCcgcCCGCAGccaccaugcGUCg -3'
miRNA:   3'- gC-CCAGCgCGGGCCGua-GGUGUC---------CAG- -5'
26319 3' -62.1 NC_005345.2 + 40884 0.67 0.305036
Target:  5'- aGGGcacUCGUGaaccccgcgcucgaaCCCGGCgaGUCCuGCGGGUCg -3'
miRNA:   3'- gCCC---AGCGC---------------GGGCCG--UAGG-UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 42874 0.67 0.287943
Target:  5'- -cGGUCGgugaCGCCCGGCGcCCACGGa-- -3'
miRNA:   3'- gcCCAGC----GCGGGCCGUaGGUGUCcag -5'
26319 3' -62.1 NC_005345.2 + 43499 0.68 0.274282
Target:  5'- cCGGGcC-CGCCgGGCGgugCCGauCGGGUCg -3'
miRNA:   3'- -GCCCaGcGCGGgCCGUa--GGU--GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 44619 0.68 0.248524
Target:  5'- cCGGGUCGUGCCCcucgucgaGGCAgaccggagcgaUCC-C-GGUCg -3'
miRNA:   3'- -GCCCAGCGCGGG--------CCGU-----------AGGuGuCCAG- -5'
26319 3' -62.1 NC_005345.2 + 45198 0.66 0.345504
Target:  5'- gGGGUCGCcucgacguacagacGCCCGGU---CACGGGg- -3'
miRNA:   3'- gCCCAGCG--------------CGGGCCGuagGUGUCCag -5'
26319 3' -62.1 NC_005345.2 + 45580 0.66 0.372583
Target:  5'- -cGGUUGCGgCCGGgGgCCGCgaacGGGUCg -3'
miRNA:   3'- gcCCAGCGCgGGCCgUaGGUG----UCCAG- -5'
26319 3' -62.1 NC_005345.2 + 46237 0.7 0.192839
Target:  5'- uGGGcCGCuGCCCGGUccgccgAUCCGCucGUCg -3'
miRNA:   3'- gCCCaGCG-CGGGCCG------UAGGUGucCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.