miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26319 3' -62.1 NC_005345.2 + 29383 0.66 0.364227
Target:  5'- uCGGuGUCGUacgGCUCGGCcgCCGCcucggccucGGUCg -3'
miRNA:   3'- -GCC-CAGCG---CGGGCCGuaGGUGu--------CCAG- -5'
26319 3' -62.1 NC_005345.2 + 29140 0.68 0.248524
Target:  5'- uCGucUCGUGCCCGGCAgcCCGCcuGUCg -3'
miRNA:   3'- -GCccAGCGCGGGCCGUa-GGUGucCAG- -5'
26319 3' -62.1 NC_005345.2 + 27034 0.67 0.309429
Target:  5'- uCGGGUCGUGCCggucguugUGGCca-CGCAGG-Cg -3'
miRNA:   3'- -GCCCAGCGCGG--------GCCGuagGUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 24288 0.7 0.192839
Target:  5'- gCGcGGUCGCGUCCGuCAcgCCGCGGGa- -3'
miRNA:   3'- -GC-CCAGCGCGGGCcGUa-GGUGUCCag -5'
26319 3' -62.1 NC_005345.2 + 23672 0.67 0.294972
Target:  5'- aGGGUCGCGgCCGGUcgg-GCGGGcCg -3'
miRNA:   3'- gCCCAGCGCgGGCCGuaggUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 23570 0.67 0.316858
Target:  5'- -cGGcCGCGUCCGaGCugcggCUGCGGGUCg -3'
miRNA:   3'- gcCCaGCGCGGGC-CGua---GGUGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 22515 0.69 0.219176
Target:  5'- aCGGGUCGCccgGCCgGGCGcccgaCACGGGa- -3'
miRNA:   3'- -GCCCAGCG---CGGgCCGUag---GUGUCCag -5'
26319 3' -62.1 NC_005345.2 + 22312 0.67 0.307227
Target:  5'- aGGuGUCGCgGUCCGGUucggGUCUgcacgugugggggcGCGGGUCg -3'
miRNA:   3'- gCC-CAGCG-CGGGCCG----UAGG--------------UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 21576 0.67 0.302134
Target:  5'- -cGGUaauccgGCGCCCGGCcgCCG-GGGUCc -3'
miRNA:   3'- gcCCAg-----CGCGGGCCGuaGGUgUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 21027 0.66 0.33134
Target:  5'- cCGGGUgcguuccucggcaCGCGCgCCGGCGaCCGCcucGUCg -3'
miRNA:   3'- -GCCCA-------------GCGCG-GGCCGUaGGUGuc-CAG- -5'
26319 3' -62.1 NC_005345.2 + 20524 0.69 0.23582
Target:  5'- cCGGGaUCGgccugcggcgacaCGCCCGGCAUgCGCGauucggugugcGGUCg -3'
miRNA:   3'- -GCCC-AGC-------------GCGGGCCGUAgGUGU-----------CCAG- -5'
26319 3' -62.1 NC_005345.2 + 18983 0.68 0.274282
Target:  5'- uGGGUCGcCGCuggCCGGCGggacgaccUCgACGGGUg -3'
miRNA:   3'- gCCCAGC-GCG---GGCCGU--------AGgUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 18653 0.72 0.140706
Target:  5'- gCGGGUCGCuGUCCGGCAgccucaCCGaagaGGGUg -3'
miRNA:   3'- -GCCCAGCG-CGGGCCGUa-----GGUg---UCCAg -5'
26319 3' -62.1 NC_005345.2 + 18566 0.75 0.086352
Target:  5'- cCGGGUgCGCGCCCaGCGUcgggaacaCCGcCGGGUCg -3'
miRNA:   3'- -GCCCA-GCGCGGGcCGUA--------GGU-GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 18393 0.7 0.185016
Target:  5'- uCGGucGUCGUGCCCGGCGUCucgaccUcgacgacgugcggcaGCAGGUCc -3'
miRNA:   3'- -GCC--CAGCGCGGGCCGUAG------G---------------UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 17556 0.71 0.173806
Target:  5'- gCGGGcCGCgccgagcaggGCCCGGCAgagCUgcauCAGGUCg -3'
miRNA:   3'- -GCCCaGCG----------CGGGCCGUa--GGu---GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 17372 0.66 0.339156
Target:  5'- uCGGGcUCGUaCUCGGUgccguccgcggugGUCCGCGGGUa -3'
miRNA:   3'- -GCCC-AGCGcGGGCCG-------------UAGGUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 16189 0.66 0.364227
Target:  5'- aCGcGGaCGCGgCCGGCGUCCGCc--UCg -3'
miRNA:   3'- -GC-CCaGCGCgGGCCGUAGGUGuccAG- -5'
26319 3' -62.1 NC_005345.2 + 15480 0.71 0.148396
Target:  5'- uCGGGUCGaGCCCGaGCugcgCCGCAaGUCg -3'
miRNA:   3'- -GCCCAGCgCGGGC-CGua--GGUGUcCAG- -5'
26319 3' -62.1 NC_005345.2 + 12650 0.68 0.2418
Target:  5'- cCGGGgCGCGgUCGGCcgCCGuuggcguacccgcCGGGUCg -3'
miRNA:   3'- -GCCCaGCGCgGGCCGuaGGU-------------GUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.