miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26319 3' -62.1 NC_005345.2 + 42874 0.67 0.287943
Target:  5'- -cGGUCGgugaCGCCCGGCGcCCACGGa-- -3'
miRNA:   3'- gcCCAGC----GCGGGCCGUaGGUGUCcag -5'
26319 3' -62.1 NC_005345.2 + 33477 0.67 0.281047
Target:  5'- -aGGUCGgGCCCGGUGUgucaCCACcgggcccGGUCg -3'
miRNA:   3'- gcCCAGCgCGGGCCGUA----GGUGu------CCAG- -5'
26319 3' -62.1 NC_005345.2 + 15480 0.71 0.148396
Target:  5'- uCGGGUCGaGCCCGaGCugcgCCGCAaGUCg -3'
miRNA:   3'- -GCCCAGCgCGGGC-CGua--GGUGUcCAG- -5'
26319 3' -62.1 NC_005345.2 + 17556 0.71 0.173806
Target:  5'- gCGGGcCGCgccgagcaggGCCCGGCAgagCUgcauCAGGUCg -3'
miRNA:   3'- -GCCCaGCG----------CGGGCCGUa--GGu---GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 18393 0.7 0.185016
Target:  5'- uCGGucGUCGUGCCCGGCGUCucgaccUcgacgacgugcggcaGCAGGUCc -3'
miRNA:   3'- -GCC--CAGCGCGGGCCGUAG------G---------------UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 24288 0.7 0.192839
Target:  5'- gCGcGGUCGCGUCCGuCAcgCCGCGGGa- -3'
miRNA:   3'- -GC-CCAGCGCGGGCcGUa-GGUGUCCag -5'
26319 3' -62.1 NC_005345.2 + 3596 0.69 0.212046
Target:  5'- gCGGGUCGUcgGCCCacaggugaccccacGGCccgcgCCGCAGGUg -3'
miRNA:   3'- -GCCCAGCG--CGGG--------------CCGua---GGUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 12650 0.68 0.2418
Target:  5'- cCGGGgCGCGgUCGGCcgCCGuuggcguacccgcCGGGUCg -3'
miRNA:   3'- -GCCCaGCGCgGGCCGuaGGU-------------GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 29140 0.68 0.248524
Target:  5'- uCGucUCGUGCCCGGCAgcCCGCcuGUCg -3'
miRNA:   3'- -GCccAGCGCGGGCCGUa-GGUGucCAG- -5'
26319 3' -62.1 NC_005345.2 + 44619 0.68 0.248524
Target:  5'- cCGGGUCGUGCCCcucgucgaGGCAgaccggagcgaUCC-C-GGUCg -3'
miRNA:   3'- -GCCCAGCGCGGG--------CCGU-----------AGGuGuCCAG- -5'
26319 3' -62.1 NC_005345.2 + 37716 0.68 0.267648
Target:  5'- gCGGGaUCGCGCUgCGGCGcggcgCCGgCuGGUCg -3'
miRNA:   3'- -GCCC-AGCGCGG-GCCGUa----GGU-GuCCAG- -5'
26319 3' -62.1 NC_005345.2 + 43499 0.68 0.274282
Target:  5'- cCGGGcC-CGCCgGGCGgugCCGauCGGGUCg -3'
miRNA:   3'- -GCCCaGcGCGGgCCGUa--GGU--GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 45580 0.66 0.372583
Target:  5'- -cGGUUGCGgCCGGgGgCCGCgaacGGGUCg -3'
miRNA:   3'- gcCCAGCGCgGGCCgUaGGUG----UCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.