miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26319 3' -62.1 NC_005345.2 + 22312 0.67 0.307227
Target:  5'- aGGuGUCGCgGUCCGGUucggGUCUgcacgugugggggcGCGGGUCg -3'
miRNA:   3'- gCC-CAGCG-CGGGCCG----UAGG--------------UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 40884 0.67 0.305036
Target:  5'- aGGGcacUCGUGaaccccgcgcucgaaCCCGGCgaGUCCuGCGGGUCg -3'
miRNA:   3'- gCCC---AGCGC---------------GGGCCG--UAGG-UGUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 21576 0.67 0.302134
Target:  5'- -cGGUaauccgGCGCCCGGCcgCCG-GGGUCc -3'
miRNA:   3'- gcCCAg-----CGCGGGCCGuaGGUgUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 23672 0.67 0.294972
Target:  5'- aGGGUCGCGgCCGGUcgg-GCGGGcCg -3'
miRNA:   3'- gCCCAGCGCgGGCCGuaggUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 39543 0.67 0.287943
Target:  5'- -aGGUCGUGCaCCGGCc-CCGCGgccGGUCc -3'
miRNA:   3'- gcCCAGCGCG-GGCCGuaGGUGU---CCAG- -5'
26319 3' -62.1 NC_005345.2 + 42874 0.67 0.287943
Target:  5'- -cGGUCGgugaCGCCCGGCGcCCACGGa-- -3'
miRNA:   3'- gcCCAGC----GCGGGCCGUaGGUGUCcag -5'
26319 3' -62.1 NC_005345.2 + 33477 0.67 0.281047
Target:  5'- -aGGUCGgGCCCGGUGUgucaCCACcgggcccGGUCg -3'
miRNA:   3'- gcCCAGCgCGGGCCGUA----GGUGu------CCAG- -5'
26319 3' -62.1 NC_005345.2 + 18983 0.68 0.274282
Target:  5'- uGGGUCGcCGCuggCCGGCGggacgaccUCgACGGGUg -3'
miRNA:   3'- gCCCAGC-GCG---GGCCGU--------AGgUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 43499 0.68 0.274282
Target:  5'- cCGGGcC-CGCCgGGCGgugCCGauCGGGUCg -3'
miRNA:   3'- -GCCCaGcGCGGgCCGUa--GGU--GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 37716 0.68 0.267648
Target:  5'- gCGGGaUCGCGCUgCGGCGcggcgCCGgCuGGUCg -3'
miRNA:   3'- -GCCC-AGCGCGG-GCCGUa----GGU-GuCCAG- -5'
26319 3' -62.1 NC_005345.2 + 2042 0.68 0.25477
Target:  5'- gCGGGcccggCGCgGCCCGGCGggCCGCGGcGa- -3'
miRNA:   3'- -GCCCa----GCG-CGGGCCGUa-GGUGUC-Cag -5'
26319 3' -62.1 NC_005345.2 + 44619 0.68 0.248524
Target:  5'- cCGGGUCGUGCCCcucgucgaGGCAgaccggagcgaUCC-C-GGUCg -3'
miRNA:   3'- -GCCCAGCGCGGG--------CCGU-----------AGGuGuCCAG- -5'
26319 3' -62.1 NC_005345.2 + 29140 0.68 0.248524
Target:  5'- uCGucUCGUGCCCGGCAgcCCGCcuGUCg -3'
miRNA:   3'- -GCccAGCGCGGGCCGUa-GGUGucCAG- -5'
26319 3' -62.1 NC_005345.2 + 12650 0.68 0.2418
Target:  5'- cCGGGgCGCGgUCGGCcgCCGuuggcguacccgcCGGGUCg -3'
miRNA:   3'- -GCCCaGCGCgGGCCGuaGGU-------------GUCCAG- -5'
26319 3' -62.1 NC_005345.2 + 3484 0.69 0.236412
Target:  5'- cCGGGU-GCacuGCCCGGUcgUCGCAGG-Cg -3'
miRNA:   3'- -GCCCAgCG---CGGGCCGuaGGUGUCCaG- -5'
26319 3' -62.1 NC_005345.2 + 20524 0.69 0.23582
Target:  5'- cCGGGaUCGgccugcggcgacaCGCCCGGCAUgCGCGauucggugugcGGUCg -3'
miRNA:   3'- -GCCC-AGC-------------GCGGGCCGUAgGUGU-----------CCAG- -5'
26319 3' -62.1 NC_005345.2 + 5355 0.69 0.224799
Target:  5'- uGGGcgCGCuGCCCGGCgAUCUcCAGGa- -3'
miRNA:   3'- gCCCa-GCG-CGGGCCG-UAGGuGUCCag -5'
26319 3' -62.1 NC_005345.2 + 22515 0.69 0.219176
Target:  5'- aCGGGUCGCccgGCCgGGCGcccgaCACGGGa- -3'
miRNA:   3'- -GCCCAGCG---CGGgCCGUag---GUGUCCag -5'
26319 3' -62.1 NC_005345.2 + 30684 0.69 0.213674
Target:  5'- uGGGUCGaCGaUCCGGCcggCUGCGGGUg -3'
miRNA:   3'- gCCCAGC-GC-GGGCCGua-GGUGUCCAg -5'
26319 3' -62.1 NC_005345.2 + 3596 0.69 0.212046
Target:  5'- gCGGGUCGUcgGCCCacaggugaccccacGGCccgcgCCGCAGGUg -3'
miRNA:   3'- -GCCCAGCG--CGGG--------------CCGua---GGUGUCCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.