miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2632 3' -43.2 NC_001491.2 + 103211 0.66 1
Target:  5'- aAAAACGguUUACagACAAAGUUcaUGUUCc -3'
miRNA:   3'- gUUUUGCguGAUG--UGUUUCAA--ACGAG- -5'
2632 3' -43.2 NC_001491.2 + 19388 0.66 1
Target:  5'- aCAGGACGC-CUcCAUAAAGUUUuuUCu -3'
miRNA:   3'- -GUUUUGCGuGAuGUGUUUCAAAcgAG- -5'
2632 3' -43.2 NC_001491.2 + 8783 0.66 1
Target:  5'- ---cGCGCACccUGCGCAGGGcgcUGCUg -3'
miRNA:   3'- guuuUGCGUG--AUGUGUUUCaa-ACGAg -5'
2632 3' -43.2 NC_001491.2 + 75194 0.66 1
Target:  5'- gGAGGCuaGaCUACugGCGGAGUUUGCUg -3'
miRNA:   3'- gUUUUGcgU-GAUG--UGUUUCAAACGAg -5'
2632 3' -43.2 NC_001491.2 + 95078 0.67 0.999999
Target:  5'- ----uCGUACUGCACAGAGguggguaGCUUu -3'
miRNA:   3'- guuuuGCGUGAUGUGUUUCaaa----CGAG- -5'
2632 3' -43.2 NC_001491.2 + 28346 0.68 0.999996
Target:  5'- --uGGCGCGCaGCGgGAAGcucUGCUCg -3'
miRNA:   3'- guuUUGCGUGaUGUgUUUCaa-ACGAG- -5'
2632 3' -43.2 NC_001491.2 + 63293 0.69 0.999978
Target:  5'- uCAcgGCGCACUugGCGguguGGGUgaGCUUg -3'
miRNA:   3'- -GUuuUGCGUGAugUGU----UUCAaaCGAG- -5'
2632 3' -43.2 NC_001491.2 + 95351 0.69 0.99997
Target:  5'- gAGAGCGC-CUcACACGAugacccauccaGGUUUGCUg -3'
miRNA:   3'- gUUUUGCGuGA-UGUGUU-----------UCAAACGAg -5'
2632 3' -43.2 NC_001491.2 + 87674 0.69 0.999958
Target:  5'- uGAAACGCucCUGCGCGuAGcuauugUGCUCu -3'
miRNA:   3'- gUUUUGCGu-GAUGUGUuUCaa----ACGAG- -5'
2632 3' -43.2 NC_001491.2 + 123330 0.7 0.999924
Target:  5'- -cAAGCGCGCUccaGCGCGugGAGcuaUGCUCg -3'
miRNA:   3'- guUUUGCGUGA---UGUGU--UUCaa-ACGAG- -5'
2632 3' -43.2 NC_001491.2 + 116842 0.7 0.999898
Target:  5'- gCGAGACGCACcgccGCGCGuGGGUUUGUg- -3'
miRNA:   3'- -GUUUUGCGUGa---UGUGU-UUCAAACGag -5'
2632 3' -43.2 NC_001491.2 + 28445 0.7 0.999865
Target:  5'- cCAGcAGCGCcCUGCGCAGGGUgcGCg- -3'
miRNA:   3'- -GUU-UUGCGuGAUGUGUUUCAaaCGag -5'
2632 3' -43.2 NC_001491.2 + 67728 0.7 0.999823
Target:  5'- --cAGCGCGC-ACACAGAGUccccgUUGCa- -3'
miRNA:   3'- guuUUGCGUGaUGUGUUUCA-----AACGag -5'
2632 3' -43.2 NC_001491.2 + 142270 0.73 0.996897
Target:  5'- uGGAGCGCACguuUACAGAGagcaugUGCUCc -3'
miRNA:   3'- gUUUUGCGUGau-GUGUUUCaa----ACGAG- -5'
2632 3' -43.2 NC_001491.2 + 118093 0.74 0.994821
Target:  5'- --cGACGCGa-GCGCAAAGUUUGUUUa -3'
miRNA:   3'- guuUUGCGUgaUGUGUUUCAAACGAG- -5'
2632 3' -43.2 NC_001491.2 + 143566 1.11 0.035324
Target:  5'- uCAAAACGCACUACACAAAGUUUGCUCu -3'
miRNA:   3'- -GUUUUGCGUGAUGUGUUUCAAACGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.