miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26320 3' -56.4 NC_005345.2 + 15847 0.66 0.593834
Target:  5'- gCGGGCCCGCucGCGGUgggcgaGCAGCUcgGCg -3'
miRNA:   3'- -GCUCGGGCGuaUGCUAgg----UGUCGG--UG- -5'
26320 3' -56.4 NC_005345.2 + 8022 0.66 0.582844
Target:  5'- aCGAGCUCGaCGggcuCGAccUCgCGCAGCUGCa -3'
miRNA:   3'- -GCUCGGGC-GUau--GCU--AG-GUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 12156 0.66 0.582844
Target:  5'- cCGAGCCCGUAcucgACaGGUUCGacaAGCCGa -3'
miRNA:   3'- -GCUCGGGCGUa---UG-CUAGGUg--UCGGUg -5'
26320 3' -56.4 NC_005345.2 + 45001 0.66 0.582844
Target:  5'- uCGAcaCCCGCucgACGAgcgCCgcgaGCAGCCGCu -3'
miRNA:   3'- -GCUc-GGGCGua-UGCUa--GG----UGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 27141 0.66 0.582844
Target:  5'- gCGGGCCCgGCAUGCcgccgugCgGCAGCgGCc -3'
miRNA:   3'- -GCUCGGG-CGUAUGcua----GgUGUCGgUG- -5'
26320 3' -56.4 NC_005345.2 + 41812 0.66 0.582844
Target:  5'- gCGGGCcacaCCGCGUGCGAcUCgGCGuCCGCc -3'
miRNA:   3'- -GCUCG----GGCGUAUGCU-AGgUGUcGGUG- -5'
26320 3' -56.4 NC_005345.2 + 11059 0.67 0.571895
Target:  5'- aGuuUCUGCGUGCG-UCCAUGGCUGCg -3'
miRNA:   3'- gCucGGGCGUAUGCuAGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 38287 0.67 0.571895
Target:  5'- gGAcGCgCCGCGUGCGGcagUCCGCccaCCGCa -3'
miRNA:   3'- gCU-CG-GGCGUAUGCU---AGGUGuc-GGUG- -5'
26320 3' -56.4 NC_005345.2 + 37840 0.67 0.560995
Target:  5'- gGGGCCCuGacuGUGCGGUCgguCGCGGCCGg -3'
miRNA:   3'- gCUCGGG-Cg--UAUGCUAG---GUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 40433 0.67 0.560995
Target:  5'- --cGCCgGCGacggACGAgucggCCACAGCCGg -3'
miRNA:   3'- gcuCGGgCGUa---UGCUa----GGUGUCGGUg -5'
26320 3' -56.4 NC_005345.2 + 25450 0.67 0.560995
Target:  5'- aGAGCCCcguaccgcucGCGUGCGcUCgGCccgcccgaccGGCCGCg -3'
miRNA:   3'- gCUCGGG----------CGUAUGCuAGgUG----------UCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 33317 0.67 0.550154
Target:  5'- gCGGGCCCGCGcccaucUCCACgcGGUCGCg -3'
miRNA:   3'- -GCUCGGGCGUaugcu-AGGUG--UCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 2042 0.67 0.550154
Target:  5'- gCGGGCCCggcGCGgcccgGCGggCCGCGGCgAa -3'
miRNA:   3'- -GCUCGGG---CGUa----UGCuaGGUGUCGgUg -5'
26320 3' -56.4 NC_005345.2 + 3347 0.67 0.539378
Target:  5'- gCGGGCgCCGCGUuCGAUCgCGCGGa-GCa -3'
miRNA:   3'- -GCUCG-GGCGUAuGCUAG-GUGUCggUG- -5'
26320 3' -56.4 NC_005345.2 + 32859 0.67 0.539378
Target:  5'- uCGGGCugCCGCAgUACaagCUGCAGCCGCu -3'
miRNA:   3'- -GCUCG--GGCGU-AUGcuaGGUGUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 21823 0.67 0.539378
Target:  5'- aGGGUCCGCAgaucg-CCucuCAGCCACu -3'
miRNA:   3'- gCUCGGGCGUaugcuaGGu--GUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 45998 0.67 0.528674
Target:  5'- aCGAGCUCGCcgACGccGUCggCACGGCUguGCa -3'
miRNA:   3'- -GCUCGGGCGuaUGC--UAG--GUGUCGG--UG- -5'
26320 3' -56.4 NC_005345.2 + 43917 0.67 0.528674
Target:  5'- gCGcAGCgCGUcgGCGAUCaggcCGGCCGCg -3'
miRNA:   3'- -GC-UCGgGCGuaUGCUAGgu--GUCGGUG- -5'
26320 3' -56.4 NC_005345.2 + 42649 0.67 0.51805
Target:  5'- uCGAGCCCuGCG-GCG-UCCACGccucgggcucGCCGCc -3'
miRNA:   3'- -GCUCGGG-CGUaUGCuAGGUGU----------CGGUG- -5'
26320 3' -56.4 NC_005345.2 + 6931 0.67 0.51805
Target:  5'- uCGGcGCgCGCGUACauGUCCGCGGCC-Ca -3'
miRNA:   3'- -GCU-CGgGCGUAUGc-UAGGUGUCGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.