Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26320 | 5' | -58.8 | NC_005345.2 | + | 14904 | 0.68 | 0.369401 |
Target: 5'- aGCaGCGGGCgaaGCGGGCCGCggcgcGGCGg -3' miRNA: 3'- -CG-CGUCCGa--CGUCUGGCGacac-UCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 30698 | 0.68 | 0.369401 |
Target: 5'- -gGCcGGCUGCGGgugGCCGCgGUGAucgGCGa -3' miRNA: 3'- cgCGuCCGACGUC---UGGCGaCACU---CGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 46317 | 0.68 | 0.368533 |
Target: 5'- aGCGCAcGCUGUcGGCCucgcggcGCUG-GAGCAg -3' miRNA: 3'- -CGCGUcCGACGuCUGG-------CGACaCUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 4358 | 0.68 | 0.36078 |
Target: 5'- uGCcuCGGGCggGCGGGCCGCUcgGUGGGgGu -3' miRNA: 3'- -CGc-GUCCGa-CGUCUGGCGA--CACUCgU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 32043 | 0.68 | 0.359926 |
Target: 5'- -gGCAuGGCUGCcggucGGGCUGCUGUccgaggacggugcGAGCGa -3' miRNA: 3'- cgCGU-CCGACG-----UCUGGCGACA-------------CUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 9729 | 0.68 | 0.355676 |
Target: 5'- cGCGCGGGCcGC-GACCGCgccgacgcucccGGGCAc -3' miRNA: 3'- -CGCGUCCGaCGuCUGGCGaca---------CUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 32867 | 0.68 | 0.335769 |
Target: 5'- cCGCAGuacaaGCUGCAG-CCGCUGUucgaGGCGu -3' miRNA: 3'- cGCGUC-----CGACGUCuGGCGACAc---UCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 19090 | 0.69 | 0.319811 |
Target: 5'- cGUGCGGGCcgUGCcguGGCUGaUGUGGGCGc -3' miRNA: 3'- -CGCGUCCG--ACGu--CUGGCgACACUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 37573 | 0.69 | 0.319811 |
Target: 5'- -gGCGGGCgcagGCGGGCUGCagGcGGGCGa -3' miRNA: 3'- cgCGUCCGa---CGUCUGGCGa-CaCUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 47112 | 0.69 | 0.312048 |
Target: 5'- cGUGUccuguGGCUGCAGGCCgGCcccgGAGCAg -3' miRNA: 3'- -CGCGu----CCGACGUCUGG-CGaca-CUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 35957 | 0.69 | 0.312048 |
Target: 5'- cGCGCGGGCUGCcgcucGGGCCggucaucgGUUGUccuuccgccGAGCGg -3' miRNA: 3'- -CGCGUCCGACG-----UCUGG--------CGACA---------CUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 37965 | 0.69 | 0.304428 |
Target: 5'- gGCGUcgaccAGGCUGCGGACCuGCgccgGGGUg -3' miRNA: 3'- -CGCG-----UCCGACGUCUGG-CGaca-CUCGu -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 12442 | 0.69 | 0.303674 |
Target: 5'- cGCGCGGGCUaccucgcGCAGcUCGCg--GGGCAg -3' miRNA: 3'- -CGCGUCCGA-------CGUCuGGCGacaCUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 20334 | 0.7 | 0.274686 |
Target: 5'- uGgGCAGGCgcgcggUGCGGACCuugccguGC-GUGAGCAu -3' miRNA: 3'- -CgCGUCCG------ACGUCUGG-------CGaCACUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 45200 | 0.7 | 0.242246 |
Target: 5'- cCGCccgagAGGCUGCcGGCCGCgGcGAGCAc -3' miRNA: 3'- cGCG-----UCCGACGuCUGGCGaCaCUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 36333 | 0.71 | 0.236031 |
Target: 5'- gGCGCAGGCgaaccgGCGGGCCGagcGgcucGGGCGg -3' miRNA: 3'- -CGCGUCCGa-----CGUCUGGCga-Ca---CUCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 19129 | 0.71 | 0.224001 |
Target: 5'- aUGguGGCUGCGGGCCGCaUG-GcGCGc -3' miRNA: 3'- cGCguCCGACGUCUGGCG-ACaCuCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 37508 | 0.71 | 0.218184 |
Target: 5'- gGCGCGGGCUGCGG--CGCgGUGcGCu -3' miRNA: 3'- -CGCGUCCGACGUCugGCGaCACuCGu -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 7365 | 0.71 | 0.218184 |
Target: 5'- gGCGCagccGGGCgggGguGGCCGCUGaUGuGGCAu -3' miRNA: 3'- -CGCG----UCCGa--CguCUGGCGAC-AC-UCGU- -5' |
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26320 | 5' | -58.8 | NC_005345.2 | + | 32897 | 0.71 | 0.206938 |
Target: 5'- cCGCAGGCUGgGGG-CGCUGcGGGCc -3' miRNA: 3'- cGCGUCCGACgUCUgGCGACaCUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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