miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26321 3' -61.1 NC_005345.2 + 39376 0.66 0.401371
Target:  5'- cUGUCgcagcuaCGcCUCGGCGGcgcaaucGCCGUGCCCGg -3'
miRNA:   3'- cACAG-------GCcGAGCUGCU-------CGGCACGGGU- -5'
26321 3' -61.1 NC_005345.2 + 1277 0.66 0.394273
Target:  5'- -cG-CCGGC-CGACGucaccgucGCCGgGCCCAu -3'
miRNA:   3'- caCaGGCCGaGCUGCu-------CGGCaCGGGU- -5'
26321 3' -61.1 NC_005345.2 + 36935 0.66 0.394273
Target:  5'- -aGUCCGGCcgaccgCGGCGAGUCcucGCUCGu -3'
miRNA:   3'- caCAGGCCGa-----GCUGCUCGGca-CGGGU- -5'
26321 3' -61.1 NC_005345.2 + 47704 0.66 0.394273
Target:  5'- --aUCCGGUaCGACGAccCCGUGCCg- -3'
miRNA:   3'- cacAGGCCGaGCUGCUc-GGCACGGgu -5'
26321 3' -61.1 NC_005345.2 + 41536 0.66 0.393392
Target:  5'- -cGUCuCGGCgaccuggUCGACGAcGUCGUGCgCGc -3'
miRNA:   3'- caCAG-GCCG-------AGCUGCU-CGGCACGgGU- -5'
26321 3' -61.1 NC_005345.2 + 17951 0.66 0.385516
Target:  5'- cUGUCCGGCguccgcUCGGCcgccugccGGGCCGcgGCCUc -3'
miRNA:   3'- cACAGGCCG------AGCUG--------CUCGGCa-CGGGu -5'
26321 3' -61.1 NC_005345.2 + 9810 0.66 0.385516
Target:  5'- uGUGUCgCGGC-CGGUGccGCCGaUGCCCGa -3'
miRNA:   3'- -CACAG-GCCGaGCUGCu-CGGC-ACGGGU- -5'
26321 3' -61.1 NC_005345.2 + 43496 0.66 0.376888
Target:  5'- -gGUCCGGgCcCGcCGGGCgGUGCCg- -3'
miRNA:   3'- caCAGGCC-GaGCuGCUCGgCACGGgu -5'
26321 3' -61.1 NC_005345.2 + 28681 0.66 0.368391
Target:  5'- -cGUCCGGCaaGuACGGGCCGUacaacaacGCCg- -3'
miRNA:   3'- caCAGGCCGagC-UGCUCGGCA--------CGGgu -5'
26321 3' -61.1 NC_005345.2 + 34477 0.66 0.368391
Target:  5'- -gGcCCGGCaUCGGCGAcGCC--GCCCGg -3'
miRNA:   3'- caCaGGCCG-AGCUGCU-CGGcaCGGGU- -5'
26321 3' -61.1 NC_005345.2 + 38436 0.66 0.368391
Target:  5'- --aUCCGGC-CGACGAGCU--GCCgCAg -3'
miRNA:   3'- cacAGGCCGaGCUGCUCGGcaCGG-GU- -5'
26321 3' -61.1 NC_005345.2 + 6185 0.66 0.360027
Target:  5'- -gGcCCGGUUCGugcGCGuGCCGcccgGCCCGu -3'
miRNA:   3'- caCaGGCCGAGC---UGCuCGGCa---CGGGU- -5'
26321 3' -61.1 NC_005345.2 + 7747 0.66 0.360027
Target:  5'- ---aCCGGCUCGACGGcacGCCGcUGCa-- -3'
miRNA:   3'- cacaGGCCGAGCUGCU---CGGC-ACGggu -5'
26321 3' -61.1 NC_005345.2 + 33520 0.67 0.351796
Target:  5'- -aGUCCgGGCaggCGGCGAGCCGcggcaUGCUg- -3'
miRNA:   3'- caCAGG-CCGa--GCUGCUCGGC-----ACGGgu -5'
26321 3' -61.1 NC_005345.2 + 3178 0.67 0.343699
Target:  5'- gGUG-CCGGgUCGGCGAGCCcugagggaugucGUaCCCGg -3'
miRNA:   3'- -CACaGGCCgAGCUGCUCGG------------CAcGGGU- -5'
26321 3' -61.1 NC_005345.2 + 40752 0.67 0.343699
Target:  5'- -cGUCgaccggcagCGGCUCGuCGGGCCGgucgGCCg- -3'
miRNA:   3'- caCAG---------GCCGAGCuGCUCGGCa---CGGgu -5'
26321 3' -61.1 NC_005345.2 + 12211 0.67 0.335737
Target:  5'- cUGUCCGGC-CGccgccuccCGAGCCGUGgcgaugauCCCGc -3'
miRNA:   3'- cACAGGCCGaGCu-------GCUCGGCAC--------GGGU- -5'
26321 3' -61.1 NC_005345.2 + 37337 0.67 0.335737
Target:  5'- -gGUCCGGUugUCGAacgcCGcGgCGUGCCCGa -3'
miRNA:   3'- caCAGGCCG--AGCU----GCuCgGCACGGGU- -5'
26321 3' -61.1 NC_005345.2 + 26971 0.67 0.335737
Target:  5'- -cGUCCucgcGGCguUCGACGGGCUGUcgaGCCUg -3'
miRNA:   3'- caCAGG----CCG--AGCUGCUCGGCA---CGGGu -5'
26321 3' -61.1 NC_005345.2 + 16973 0.67 0.327911
Target:  5'- ---cUCGGC-CGGCu-GCCGUGCCCGu -3'
miRNA:   3'- cacaGGCCGaGCUGcuCGGCACGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.