miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26322 3' -64.2 NC_005345.2 + 1179 0.68 0.226433
Target:  5'- cGCGGcGCacacGGGCGGCUCGgcaguccGGCccgCGGGc -3'
miRNA:   3'- cCGCCaCG----CCCGUCGAGC-------CCGa--GCCC- -5'
26322 3' -64.2 NC_005345.2 + 2998 0.72 0.110324
Target:  5'- cGGCGGUaCGGGCGGC-CGaGGCcaguagcCGGGc -3'
miRNA:   3'- -CCGCCAcGCCCGUCGaGC-CCGa------GCCC- -5'
26322 3' -64.2 NC_005345.2 + 3224 0.66 0.287821
Target:  5'- aGCGGacaguuCGGGCAGCgcacugugcacgCGGcGCUCGGu -3'
miRNA:   3'- cCGCCac----GCCCGUCGa-----------GCC-CGAGCCc -5'
26322 3' -64.2 NC_005345.2 + 3313 0.74 0.077825
Target:  5'- cGGCGaGUGCuucgaGGGUGGCgucacUCGGGCUgCGGGc -3'
miRNA:   3'- -CCGC-CACG-----CCCGUCG-----AGCCCGA-GCCC- -5'
26322 3' -64.2 NC_005345.2 + 3423 0.77 0.046052
Target:  5'- cGGCGGgcgcggcgGCGGGCGGCgaugCGGGCcccgagcucgcgCGGGc -3'
miRNA:   3'- -CCGCCa-------CGCCCGUCGa---GCCCGa-----------GCCC- -5'
26322 3' -64.2 NC_005345.2 + 4231 0.79 0.030582
Target:  5'- aGGgGG-GCGGGguGCUCacGGCUCGGGc -3'
miRNA:   3'- -CCgCCaCGCCCguCGAGc-CCGAGCCC- -5'
26322 3' -64.2 NC_005345.2 + 4273 1.1 0.00011
Target:  5'- cGGCGGUGCGGGCAGCUCGGGCUCGGGc -3'
miRNA:   3'- -CCGCCACGCCCGUCGAGCCCGAGCCC- -5'
26322 3' -64.2 NC_005345.2 + 4364 0.73 0.09916
Target:  5'- gGGCGG-GCGGGCcGCUCGG--UgGGGg -3'
miRNA:   3'- -CCGCCaCGCCCGuCGAGCCcgAgCCC- -5'
26322 3' -64.2 NC_005345.2 + 5207 0.69 0.176508
Target:  5'- cGGCacgGcCGGGCAGCUCGcGGC-CGGc -3'
miRNA:   3'- -CCGccaC-GCCCGUCGAGC-CCGaGCCc -5'
26322 3' -64.2 NC_005345.2 + 5254 0.84 0.01324
Target:  5'- cGGUGGgcgUGaCGGGCGGCagggCGGGCUCGGGg -3'
miRNA:   3'- -CCGCC---AC-GCCCGUCGa---GCCCGAGCCC- -5'
26322 3' -64.2 NC_005345.2 + 6549 0.7 0.159271
Target:  5'- gGGCGGUGgGGGacguGGCUacgCGGGCggacccgugaCGGGc -3'
miRNA:   3'- -CCGCCACgCCCg---UCGA---GCCCGa---------GCCC- -5'
26322 3' -64.2 NC_005345.2 + 6819 0.68 0.210153
Target:  5'- cGGCGGacgccaugGCGGGCGGgaucgacauggucCUCGcGGCgacggaCGGGa -3'
miRNA:   3'- -CCGCCa-------CGCCCGUC-------------GAGC-CCGa-----GCCC- -5'
26322 3' -64.2 NC_005345.2 + 6954 0.69 0.190506
Target:  5'- uGGUGGUGCcGGCGaucGCUUcgcugcggcaGGGCuuUCGGGg -3'
miRNA:   3'- -CCGCCACGcCCGU---CGAG----------CCCG--AGCCC- -5'
26322 3' -64.2 NC_005345.2 + 7347 0.73 0.096541
Target:  5'- cGCGGUGUGGcccgcgguggcGCAGC-CGGGCggGGGu -3'
miRNA:   3'- cCGCCACGCC-----------CGUCGaGCCCGagCCC- -5'
26322 3' -64.2 NC_005345.2 + 8946 0.82 0.019586
Target:  5'- gGGCGGgcUGCGGGU-GCUCGGGCUCGa- -3'
miRNA:   3'- -CCGCC--ACGCCCGuCGAGCCCGAGCcc -5'
26322 3' -64.2 NC_005345.2 + 9354 0.83 0.014401
Target:  5'- uGGUGGcUGCGGGCGGC-CGGGCUCGa- -3'
miRNA:   3'- -CCGCC-ACGCCCGUCGaGCCCGAGCcc -5'
26322 3' -64.2 NC_005345.2 + 12614 0.69 0.195384
Target:  5'- cGCGcucgGcCGGGCacGGCUCGGGCacCGGGc -3'
miRNA:   3'- cCGCca--C-GCCCG--UCGAGCCCGa-GCCC- -5'
26322 3' -64.2 NC_005345.2 + 14820 0.67 0.238455
Target:  5'- gGGCgcgGGUGUGGucgacgcccgaGCAGCUugcCGGGCUgcagCGGGc -3'
miRNA:   3'- -CCG---CCACGCC-----------CGUCGA---GCCCGA----GCCC- -5'
26322 3' -64.2 NC_005345.2 + 14916 0.69 0.190506
Target:  5'- aGCGGgccgcgGCGcGGCGGCUgcagCGGGCggCGGc -3'
miRNA:   3'- cCGCCa-----CGC-CCGUCGA----GCCCGa-GCCc -5'
26322 3' -64.2 NC_005345.2 + 15860 0.7 0.143568
Target:  5'- cGGUGG-GCGaGCAGCUCGGcGCUUGuGa -3'
miRNA:   3'- -CCGCCaCGCcCGUCGAGCC-CGAGC-Cc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.