miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26322 3' -64.2 NC_005345.2 + 39588 0.66 0.267296
Target:  5'- cGCaGGUGCgcggggacuacgagGGGCAGCUCGGcGUgUGGa -3'
miRNA:   3'- cCG-CCACG--------------CCCGUCGAGCC-CGaGCCc -5'
26322 3' -64.2 NC_005345.2 + 27087 0.67 0.25593
Target:  5'- cGCGGUGUGccggacccaccgcGGuCGGCUCGuGaGCUCGGc -3'
miRNA:   3'- cCGCCACGC-------------CC-GUCGAGC-C-CGAGCCc -5'
26322 3' -64.2 NC_005345.2 + 45566 0.67 0.244366
Target:  5'- aGGuCGGgGCGGGCcGgUUGcGGC-CGGGg -3'
miRNA:   3'- -CC-GCCaCGCCCGuCgAGC-CCGaGCCC- -5'
26322 3' -64.2 NC_005345.2 + 21680 0.67 0.244366
Target:  5'- -cUGGUuccCGGGCaggGGCUCGGGCUugcagugacagcCGGGg -3'
miRNA:   3'- ccGCCAc--GCCCG---UCGAGCCCGA------------GCCC- -5'
26322 3' -64.2 NC_005345.2 + 34639 0.67 0.24258
Target:  5'- gGGCGGUGCGcugcucccggucucGGCcguaccagucGGCguagucgaGGGCgUCGGGg -3'
miRNA:   3'- -CCGCCACGC--------------CCG----------UCGag------CCCG-AGCCC- -5'
26322 3' -64.2 NC_005345.2 + 43955 0.67 0.238455
Target:  5'- cGGCcGUGCcgGGGCGGacCUCGGGCgagccuUCGaGGg -3'
miRNA:   3'- -CCGcCACG--CCCGUC--GAGCCCG------AGC-CC- -5'
26322 3' -64.2 NC_005345.2 + 14820 0.67 0.238455
Target:  5'- gGGCgcgGGUGUGGucgacgcccgaGCAGCUugcCGGGCUgcagCGGGc -3'
miRNA:   3'- -CCG---CCACGCC-----------CGUCGA---GCCCGA----GCCC- -5'
26322 3' -64.2 NC_005345.2 + 31251 0.67 0.238455
Target:  5'- gGGUcgGGUGCGcacucGGguGCgCGGGUgCGGGg -3'
miRNA:   3'- -CCG--CCACGC-----CCguCGaGCCCGaGCCC- -5'
26322 3' -64.2 NC_005345.2 + 1179 0.68 0.226433
Target:  5'- cGCGGcGCacacGGGCGGCUCGgcaguccGGCccgCGGGc -3'
miRNA:   3'- cCGCCaCG----CCCGUCGAGC-------CCGa--GCCC- -5'
26322 3' -64.2 NC_005345.2 + 22667 0.68 0.22144
Target:  5'- cGGaCGGU-CGGGCAGUcgcucgUCGuGGCggugaagCGGGg -3'
miRNA:   3'- -CC-GCCAcGCCCGUCG------AGC-CCGa------GCCC- -5'
26322 3' -64.2 NC_005345.2 + 43056 0.68 0.220891
Target:  5'- cGCGGUGCcGGCucGGUcgugucgUCGGGCagcagccacUCGGGa -3'
miRNA:   3'- cCGCCACGcCCG--UCG-------AGCCCG---------AGCCC- -5'
26322 3' -64.2 NC_005345.2 + 6819 0.68 0.210153
Target:  5'- cGGCGGacgccaugGCGGGCGGgaucgacauggucCUCGcGGCgacggaCGGGa -3'
miRNA:   3'- -CCGCCa-------CGCCCGUC-------------GAGC-CCGa-----GCCC- -5'
26322 3' -64.2 NC_005345.2 + 31321 0.68 0.205469
Target:  5'- cGGCGGccggGCGGGaaggggcacgcCGGCagggaugaUCcGGCUCGGGg -3'
miRNA:   3'- -CCGCCa---CGCCC-----------GUCG--------AGcCCGAGCCC- -5'
26322 3' -64.2 NC_005345.2 + 27974 0.68 0.198864
Target:  5'- cGGCGGUGCgccgucgacgggcgGGGCGucGCguaGGGCgUCGaGGa -3'
miRNA:   3'- -CCGCCACG--------------CCCGU--CGag-CCCG-AGC-CC- -5'
26322 3' -64.2 NC_005345.2 + 12614 0.69 0.195384
Target:  5'- cGCGcucgGcCGGGCacGGCUCGGGCacCGGGc -3'
miRNA:   3'- cCGCca--C-GCCCG--UCGAGCCCGa-GCCC- -5'
26322 3' -64.2 NC_005345.2 + 6954 0.69 0.190506
Target:  5'- uGGUGGUGCcGGCGaucGCUUcgcugcggcaGGGCuuUCGGGg -3'
miRNA:   3'- -CCGCCACGcCCGU---CGAG----------CCCG--AGCCC- -5'
26322 3' -64.2 NC_005345.2 + 14916 0.69 0.190506
Target:  5'- aGCGGgccgcgGCGcGGCGGCUgcagCGGGCggCGGc -3'
miRNA:   3'- cCGCCa-----CGC-CCGUCGA----GCCCGa-GCCc -5'
26322 3' -64.2 NC_005345.2 + 26356 0.69 0.185264
Target:  5'- cGCGGUGUGGGCGuCggaGGGUgagaacacgcaguUCGGGc -3'
miRNA:   3'- cCGCCACGCCCGUcGag-CCCG-------------AGCCC- -5'
26322 3' -64.2 NC_005345.2 + 46401 0.69 0.180609
Target:  5'- uGGCGcGcuccacaUGCGGGCcGCUgucaucgcCGGGCgggCGGGa -3'
miRNA:   3'- -CCGC-C-------ACGCCCGuCGA--------GCCCGa--GCCC- -5'
26322 3' -64.2 NC_005345.2 + 5207 0.69 0.176508
Target:  5'- cGGCacgGcCGGGCAGCUCGcGGC-CGGc -3'
miRNA:   3'- -CCGccaC-GCCCGUCGAGC-CCGaGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.