Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26322 | 5' | -58 | NC_005345.2 | + | 18754 | 0.66 | 0.565948 |
Target: 5'- gGACgCGUCguCGAGGuacgccUCGACCUGCGcCc -3' miRNA: 3'- -CUGgGUAG--GCUCC------AGCUGGACGCaGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 32223 | 0.66 | 0.534096 |
Target: 5'- gGGCUCGUCCGcGGUgaccgCGACCgGgGUCa -3' miRNA: 3'- -CUGGGUAGGCuCCA-----GCUGGaCgCAGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 30452 | 0.66 | 0.531993 |
Target: 5'- cACCCccgAUCCGGGcacgcugcgcgCGAUCUGCGUCg -3' miRNA: 3'- cUGGG---UAGGCUCca---------GCUGGACGCAGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 19985 | 0.66 | 0.544649 |
Target: 5'- cGACCCGguucgCCGAGGgCGACagGCGggCUg -3' miRNA: 3'- -CUGGGUa----GGCUCCaGCUGgaCGCa-GA- -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 40765 | 0.66 | 0.544648 |
Target: 5'- cGGCUCGUCgGGccGGUCGGCCgGCG-Cg -3' miRNA: 3'- -CUGGGUAGgCU--CCAGCUGGaCGCaGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 26639 | 0.66 | 0.534095 |
Target: 5'- cGCCCggCCG-GG-CGACCcGUGUCg -3' miRNA: 3'- cUGGGuaGGCuCCaGCUGGaCGCAGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 26499 | 0.67 | 0.472526 |
Target: 5'- --aCCGUCCGcAGGUCGACCccuUGCa--- -3' miRNA: 3'- cugGGUAGGC-UCCAGCUGG---ACGcaga -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 28784 | 0.67 | 0.492678 |
Target: 5'- cGACCCGUCCGGGG-CGA--UGC-UCa -3' miRNA: 3'- -CUGGGUAGGCUCCaGCUggACGcAGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 14805 | 0.68 | 0.405543 |
Target: 5'- aGugCgGcgCCGAGGucuUCGGCCUGCGUg- -3' miRNA: 3'- -CugGgUa-GGCUCC---AGCUGGACGCAga -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 20588 | 0.69 | 0.37872 |
Target: 5'- gGGCCCAaaUCCGGGGcCGGCggGCGcUCg -3' miRNA: 3'- -CUGGGU--AGGCUCCaGCUGgaCGC-AGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 41844 | 0.7 | 0.305665 |
Target: 5'- cGACUCAU-CGGGGaCGACCUcgGCGUCg -3' miRNA: 3'- -CUGGGUAgGCUCCaGCUGGA--CGCAGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 18483 | 0.7 | 0.308671 |
Target: 5'- cGACCCAUgcccggguacccgggUCGAGGUCGAgCgaguacgcgGCGUCg -3' miRNA: 3'- -CUGGGUA---------------GGCUCCAGCUgGa--------CGCAGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 5399 | 0.7 | 0.313222 |
Target: 5'- cACUCAggcCCGGcGGUCGGCCgaGCGUCUc -3' miRNA: 3'- cUGGGUa--GGCU-CCAGCUGGa-CGCAGA- -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 22637 | 0.7 | 0.313222 |
Target: 5'- cGCUCGUgCCGggugcaagGGGUCGACCUGCGg-- -3' miRNA: 3'- cUGGGUA-GGC--------UCCAGCUGGACGCaga -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 5527 | 0.71 | 0.276839 |
Target: 5'- cGACCCcgCCGGGGggccCGACCUgaucaGCGUg- -3' miRNA: 3'- -CUGGGuaGGCUCCa---GCUGGA-----CGCAga -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 32668 | 0.72 | 0.256674 |
Target: 5'- cGACgCCGUcgaggCCGAGGUCGACCUGacccCGUUc -3' miRNA: 3'- -CUG-GGUA-----GGCUCCAGCUGGAC----GCAGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 18346 | 0.73 | 0.198057 |
Target: 5'- cGGCCCGggUCGAGGUCGACCaGUcgGUCa -3' miRNA: 3'- -CUGGGUa-GGCUCCAGCUGGaCG--CAGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 22131 | 0.73 | 0.219966 |
Target: 5'- cGACCCGaUCGAGGaacUCGACC-GCGUCc -3' miRNA: 3'- -CUGGGUaGGCUCC---AGCUGGaCGCAGa -5' |
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26322 | 5' | -58 | NC_005345.2 | + | 4308 | 1.07 | 0.000693 |
Target: 5'- cGACCCAUCCGAGGUCGACCUGCGUCUc -3' miRNA: 3'- -CUGGGUAGGCUCCAGCUGGACGCAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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