miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26323 3' -55.2 NC_005345.2 + 35670 0.66 0.714746
Target:  5'- -cGCaCCGACGCGGuGcCGUCGGgccaCAGCa -3'
miRNA:   3'- gcCG-GGUUGCGUC-CuGCAGCUa---GUUG- -5'
26323 3' -55.2 NC_005345.2 + 45840 0.66 0.714746
Target:  5'- aCGGCggCGGCGCGGG-CGaCGAUCGu- -3'
miRNA:   3'- -GCCGg-GUUGCGUCCuGCaGCUAGUug -5'
26323 3' -55.2 NC_005345.2 + 14919 0.66 0.714746
Target:  5'- gGGCCgCGGCGCGGcGGCugcagCGggCGGCg -3'
miRNA:   3'- gCCGG-GUUGCGUC-CUGca---GCuaGUUG- -5'
26323 3' -55.2 NC_005345.2 + 39433 0.66 0.713669
Target:  5'- gCGGCCCGcgcgGCGCGGcucacgcGGCGgcccgcUGAUCGGCc -3'
miRNA:   3'- -GCCGGGU----UGCGUC-------CUGCa-----GCUAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 1490 0.66 0.703943
Target:  5'- gCGGCCC-GCGguGGACccgcUGAUCuGCc -3'
miRNA:   3'- -GCCGGGuUGCguCCUGca--GCUAGuUG- -5'
26323 3' -55.2 NC_005345.2 + 4290 0.66 0.703943
Target:  5'- gCGGCCgc-CGCGGGGCGccucggaGAUCAAg -3'
miRNA:   3'- -GCCGGguuGCGUCCUGCag-----CUAGUUg -5'
26323 3' -55.2 NC_005345.2 + 34661 0.66 0.700688
Target:  5'- uCGGCCguaccaguCGGCGUagucgAGGGCGUCGGggaugccgagcgagUCGGCg -3'
miRNA:   3'- -GCCGG--------GUUGCG-----UCCUGCAGCU--------------AGUUG- -5'
26323 3' -55.2 NC_005345.2 + 7756 0.66 0.697427
Target:  5'- aCGGCacgCCGcugcacgugaucgacACGCGGGuGC-UCGAUCAGCa -3'
miRNA:   3'- -GCCG---GGU---------------UGCGUCC-UGcAGCUAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 21969 0.66 0.697427
Target:  5'- aCGG-CCGGCgguagaccuccuccgGCGGGACGcCGcgCAGCg -3'
miRNA:   3'- -GCCgGGUUG---------------CGUCCUGCaGCuaGUUG- -5'
26323 3' -55.2 NC_005345.2 + 14791 0.66 0.693069
Target:  5'- -cGCCCcgguGCGCuucGACGUCGAgCGGCg -3'
miRNA:   3'- gcCGGGu---UGCGuc-CUGCAGCUaGUUG- -5'
26323 3' -55.2 NC_005345.2 + 37445 0.66 0.693069
Target:  5'- gCGGCCCGcugGUcGGcCGUCGAUCcGCc -3'
miRNA:   3'- -GCCGGGUug-CGuCCuGCAGCUAGuUG- -5'
26323 3' -55.2 NC_005345.2 + 28558 0.66 0.686516
Target:  5'- uCGGCUCcGCGCAcGGAaccgacgcgacggaGUCGGUCAc- -3'
miRNA:   3'- -GCCGGGuUGCGU-CCUg-------------CAGCUAGUug -5'
26323 3' -55.2 NC_005345.2 + 38242 0.66 0.682136
Target:  5'- gCGGaCCggUGCAGG-CGU-GAUCGAUg -3'
miRNA:   3'- -GCCgGGuuGCGUCCuGCAgCUAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 28405 0.66 0.682136
Target:  5'- gCGGCagCGGCagGCAGGGCGgaUCGGUCGc- -3'
miRNA:   3'- -GCCGg-GUUG--CGUCCUGC--AGCUAGUug -5'
26323 3' -55.2 NC_005345.2 + 38402 0.66 0.682136
Target:  5'- gGGCUCGGCGuCGGcGACGacaUCGAgcgCGGCc -3'
miRNA:   3'- gCCGGGUUGC-GUC-CUGC---AGCUa--GUUG- -5'
26323 3' -55.2 NC_005345.2 + 42128 0.66 0.682136
Target:  5'- cCGGUcgaCCGGCGaCccGGCGUCGAUCGcaGCa -3'
miRNA:   3'- -GCCG---GGUUGC-GucCUGCAGCUAGU--UG- -5'
26323 3' -55.2 NC_005345.2 + 20604 0.66 0.675553
Target:  5'- cCGGCgggcgcucgcaagucUCGGCGaCGGGGCGaUCGAgcgCAGCg -3'
miRNA:   3'- -GCCG---------------GGUUGC-GUCCUGC-AGCUa--GUUG- -5'
26323 3' -55.2 NC_005345.2 + 28062 0.66 0.671155
Target:  5'- aGGCUCaAGCGCgagggcaugAGcGACGUCGAgaagaagaUCGACg -3'
miRNA:   3'- gCCGGG-UUGCG---------UC-CUGCAGCU--------AGUUG- -5'
26323 3' -55.2 NC_005345.2 + 9013 0.66 0.671155
Target:  5'- uCGGCCUcgguGCGCGGGAUcagaGcCgGGUCGGCg -3'
miRNA:   3'- -GCCGGGu---UGCGUCCUG----CaG-CUAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 34533 0.66 0.671155
Target:  5'- gCGGCCU--CGCGGGcguaccCGUCGAUCc-- -3'
miRNA:   3'- -GCCGGGuuGCGUCCu-----GCAGCUAGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.