miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26323 3' -55.2 NC_005345.2 + 15056 0.87 0.033372
Target:  5'- cCGGCCCGGCGCAGGAacUCGAUCAGg -3'
miRNA:   3'- -GCCGGGUUGCGUCCUgcAGCUAGUUg -5'
26323 3' -55.2 NC_005345.2 + 6818 0.69 0.539378
Target:  5'- gCGGCggacgCCAugGCGGG-CGg-GAUCGACa -3'
miRNA:   3'- -GCCG-----GGUugCGUCCuGCagCUAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 39049 0.69 0.539378
Target:  5'- cCGGCCgGugggcgcuACGCAGG-CGgCGAUCGAg -3'
miRNA:   3'- -GCCGGgU--------UGCGUCCuGCaGCUAGUUg -5'
26323 3' -55.2 NC_005345.2 + 14919 0.66 0.714746
Target:  5'- gGGCCgCGGCGCGGcGGCugcagCGggCGGCg -3'
miRNA:   3'- gCCGG-GUUGCGUC-CUGca---GCuaGUUG- -5'
26323 3' -55.2 NC_005345.2 + 13799 0.72 0.371769
Target:  5'- gCGGCCCcgacACGCcccugAGGuACGUCGA-CAGCg -3'
miRNA:   3'- -GCCGGGu---UGCG-----UCC-UGCAGCUaGUUG- -5'
26323 3' -55.2 NC_005345.2 + 4414 0.71 0.379732
Target:  5'- aGGCCCGgaagcagGCGCGGGA-GUUGcUCGACc -3'
miRNA:   3'- gCCGGGU-------UGCGUCCUgCAGCuAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 29407 0.7 0.446405
Target:  5'- uCGGUgCAcGCGaCAGcGACGcCGAUCAGCg -3'
miRNA:   3'- -GCCGgGU-UGC-GUC-CUGCaGCUAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 26301 0.7 0.455316
Target:  5'- cCGaCCCGGCGacCGGGAugaccguCGUCGAUCAGCc -3'
miRNA:   3'- -GCcGGGUUGC--GUCCU-------GCAGCUAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 30696 0.69 0.486718
Target:  5'- cCGGCCgGcUGCGGGugGccgcggUGAUCGGCg -3'
miRNA:   3'- -GCCGGgUuGCGUCCugCa-----GCUAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 2044 0.69 0.539378
Target:  5'- gGGCCCGGCGCGGccCGgCGGgccgCGGCg -3'
miRNA:   3'- gCCGGGUUGCGUCcuGCaGCUa---GUUG- -5'
26323 3' -55.2 NC_005345.2 + 45664 0.69 0.51805
Target:  5'- aCGaGCCUcGCGCGGGuaACGUCGAggcaugucCGACa -3'
miRNA:   3'- -GC-CGGGuUGCGUCC--UGCAGCUa-------GUUG- -5'
26323 3' -55.2 NC_005345.2 + 35339 0.7 0.476473
Target:  5'- uCGGCgcggCCGGCGCGuGGAUGUgGAaCAGCg -3'
miRNA:   3'- -GCCG----GGUUGCGU-CCUGCAgCUaGUUG- -5'
26323 3' -55.2 NC_005345.2 + 47868 0.81 0.095379
Target:  5'- gGGCCCGGCGaCGGuGACGUCGGcCGGCg -3'
miRNA:   3'- gCCGGGUUGC-GUC-CUGCAGCUaGUUG- -5'
26323 3' -55.2 NC_005345.2 + 2221 0.69 0.528674
Target:  5'- uGGCUCAccuUGUAGGugGUCucgauguccuuGAUCAGCu -3'
miRNA:   3'- gCCGGGUu--GCGUCCugCAG-----------CUAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 39886 0.73 0.306098
Target:  5'- -cGCCaCGugGCAGGACGUgGaAUCGGCc -3'
miRNA:   3'- gcCGG-GUugCGUCCUGCAgC-UAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 6179 0.7 0.456312
Target:  5'- cCGGCCCGGCGCAGuuccgcGCGUUccgCGGCg -3'
miRNA:   3'- -GCCGGGUUGCGUCc-----UGCAGcuaGUUG- -5'
26323 3' -55.2 NC_005345.2 + 37100 0.69 0.528674
Target:  5'- gGGCUgAAC-CAGGACG-CGAUcCGGCa -3'
miRNA:   3'- gCCGGgUUGcGUCCUGCaGCUA-GUUG- -5'
26323 3' -55.2 NC_005345.2 + 30129 0.69 0.539378
Target:  5'- aCGGCUCGG-GCGGcGACGUCGA--GGCg -3'
miRNA:   3'- -GCCGGGUUgCGUC-CUGCAGCUagUUG- -5'
26323 3' -55.2 NC_005345.2 + 28752 0.73 0.329637
Target:  5'- uCGGCCC--UGCAGG-CGcccgCGGUCAACa -3'
miRNA:   3'- -GCCGGGuuGCGUCCuGCa---GCUAGUUG- -5'
26323 3' -55.2 NC_005345.2 + 28193 0.71 0.408021
Target:  5'- gCGGCUcgaCAACGCgaAGGACGUCc-UCGACg -3'
miRNA:   3'- -GCCGG---GUUGCG--UCCUGCAGcuAGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.