miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26323 5' -53.2 NC_005345.2 + 45565 0.66 0.818735
Target:  5'- gAGGUCGgggCGgGCCGguUGCggccggGGGCc -3'
miRNA:   3'- -UCCAGCaa-GCgCGGC--AUGaaca--UCCG- -5'
26323 5' -53.2 NC_005345.2 + 37230 0.66 0.818735
Target:  5'- cGuGUCGgcggCGUGCCGUAgUaGcGGGCg -3'
miRNA:   3'- uC-CAGCaa--GCGCGGCAUgAaCaUCCG- -5'
26323 5' -53.2 NC_005345.2 + 15982 0.66 0.818735
Target:  5'- gAGGUCGU-----CCGUACcucUGUGGGCg -3'
miRNA:   3'- -UCCAGCAagcgcGGCAUGa--ACAUCCG- -5'
26323 5' -53.2 NC_005345.2 + 44725 0.66 0.809209
Target:  5'- cAGGUCGagcaacuccCGCGCC-UGCUUccGGGCc -3'
miRNA:   3'- -UCCAGCaa-------GCGCGGcAUGAAcaUCCG- -5'
26323 5' -53.2 NC_005345.2 + 7974 0.66 0.809209
Target:  5'- cGGUCGUcgugUCGUGCCGUccGCgUUGacGGUc -3'
miRNA:   3'- uCCAGCA----AGCGCGGCA--UG-AACauCCG- -5'
26323 5' -53.2 NC_005345.2 + 41253 0.66 0.799491
Target:  5'- cAGGUCGUcaucacCGUGUCGgggaccgGCggGUGGGUg -3'
miRNA:   3'- -UCCAGCAa-----GCGCGGCa------UGaaCAUCCG- -5'
26323 5' -53.2 NC_005345.2 + 37855 0.66 0.779523
Target:  5'- cGGUCGgUCGCgGCCG-GCg---AGGCu -3'
miRNA:   3'- uCCAGCaAGCG-CGGCaUGaacaUCCG- -5'
26323 5' -53.2 NC_005345.2 + 12658 0.66 0.778507
Target:  5'- cGGUCGgcCGCcguuggcguacccGCCGggucGgUUGUAGGCc -3'
miRNA:   3'- uCCAGCaaGCG-------------CGGCa---UgAACAUCCG- -5'
26323 5' -53.2 NC_005345.2 + 25101 0.67 0.748414
Target:  5'- cGG-CGUUCGgGCCGcgGCUgcagGUgaAGGUg -3'
miRNA:   3'- uCCaGCAAGCgCGGCa-UGAa---CA--UCCG- -5'
26323 5' -53.2 NC_005345.2 + 31250 0.68 0.694281
Target:  5'- gGGGUCGggUGCGCacucggGUGCgcgggUGcggGGGCg -3'
miRNA:   3'- -UCCAGCaaGCGCGg-----CAUGa----ACa--UCCG- -5'
26323 5' -53.2 NC_005345.2 + 17373 0.68 0.694281
Target:  5'- cGGGcUCGUacUCgGUGCCGUccgcggugguccGCggGUAGGCg -3'
miRNA:   3'- -UCC-AGCA--AG-CGCGGCA------------UGaaCAUCCG- -5'
26323 5' -53.2 NC_005345.2 + 34392 0.68 0.683221
Target:  5'- cGGUCuc-CGCGCUGgGCaagGUGGGCg -3'
miRNA:   3'- uCCAGcaaGCGCGGCaUGaa-CAUCCG- -5'
26323 5' -53.2 NC_005345.2 + 47445 0.69 0.649781
Target:  5'- cGGUCGUcUCGCcggcccaaucuGUCGgcgACcUGUGGGCg -3'
miRNA:   3'- uCCAGCA-AGCG-----------CGGCa--UGaACAUCCG- -5'
26323 5' -53.2 NC_005345.2 + 45809 0.69 0.649781
Target:  5'- gAGGUCGUccgucgUCGCGaCCGUGacgUGcacGGCg -3'
miRNA:   3'- -UCCAGCA------AGCGC-GGCAUga-ACau-CCG- -5'
26323 5' -53.2 NC_005345.2 + 14704 0.69 0.638586
Target:  5'- -aGUCGUUCGuCGCCGUG-UUGUgcAGcGCg -3'
miRNA:   3'- ucCAGCAAGC-GCGGCAUgAACA--UC-CG- -5'
26323 5' -53.2 NC_005345.2 + 41559 0.69 0.638586
Target:  5'- -cGUCGUgcgCGCgcucGCCGUGCUcGcGGGCg -3'
miRNA:   3'- ucCAGCAa--GCG----CGGCAUGAaCaUCCG- -5'
26323 5' -53.2 NC_005345.2 + 19076 0.7 0.579394
Target:  5'- gGGGUCuacgcgaucgugcgGgcCGUGCCGUgGCUgaUGUGGGCg -3'
miRNA:   3'- -UCCAG--------------CaaGCGCGGCA-UGA--ACAUCCG- -5'
26323 5' -53.2 NC_005345.2 + 20840 0.71 0.538736
Target:  5'- uGGUCG-UCGuCGCCGUcgccCUUGgcGGGCg -3'
miRNA:   3'- uCCAGCaAGC-GCGGCAu---GAACa-UCCG- -5'
26323 5' -53.2 NC_005345.2 + 14909 0.71 0.517159
Target:  5'- gAGGaccgCGUUCGCgGCCGUGCcgccccGGGCg -3'
miRNA:   3'- -UCCa---GCAAGCG-CGGCAUGaaca--UCCG- -5'
26323 5' -53.2 NC_005345.2 + 17152 0.71 0.517159
Target:  5'- uGGUCGgggcggUCGUGCCG-ACgggGgcGGCg -3'
miRNA:   3'- uCCAGCa-----AGCGCGGCaUGaa-CauCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.