miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26324 3' -60.3 NC_005345.2 + 17889 0.66 0.444743
Target:  5'- gCGuaGUCGCCga-UCaCGGCGCCGCGc- -3'
miRNA:   3'- aGC--UAGCGGacgAG-GUCGCGGCGCuc -5'
26324 3' -60.3 NC_005345.2 + 34076 0.66 0.444743
Target:  5'- cUGAUCacgcagGCgCUGCaggCCGGCGCCcGCGAc -3'
miRNA:   3'- aGCUAG------CG-GACGa--GGUCGCGG-CGCUc -5'
26324 3' -60.3 NC_005345.2 + 42436 0.66 0.444743
Target:  5'- cCGAUCGUCaucgGCguccCCAcGCGCgGCGAu -3'
miRNA:   3'- aGCUAGCGGa---CGa---GGU-CGCGgCGCUc -5'
26324 3' -60.3 NC_005345.2 + 22613 0.66 0.444743
Target:  5'- gCGcugCGCCUGCggugguUCCGGCGCuCGUGccGGg -3'
miRNA:   3'- aGCua-GCGGACG------AGGUCGCG-GCGC--UC- -5'
26324 3' -60.3 NC_005345.2 + 13601 0.66 0.444743
Target:  5'- cUCGAccCGCCgGCggugCCcgAGCcCCGCGAGg -3'
miRNA:   3'- -AGCUa-GCGGaCGa---GG--UCGcGGCGCUC- -5'
26324 3' -60.3 NC_005345.2 + 1140 0.66 0.444743
Target:  5'- cCGGa-GCCUGggacaCCAccGCGCCGCGAGg -3'
miRNA:   3'- aGCUagCGGACga---GGU--CGCGGCGCUC- -5'
26324 3' -60.3 NC_005345.2 + 16374 0.66 0.444743
Target:  5'- gCGGcgUCGCC-GCUCU-GCGCCGCcaccauGAGg -3'
miRNA:   3'- aGCU--AGCGGaCGAGGuCGCGGCG------CUC- -5'
26324 3' -60.3 NC_005345.2 + 18559 0.66 0.435258
Target:  5'- gCGcUCGCCgggUGCgcgcCCAGCGUCGgGAa -3'
miRNA:   3'- aGCuAGCGG---ACGa---GGUCGCGGCgCUc -5'
26324 3' -60.3 NC_005345.2 + 31246 0.66 0.435258
Target:  5'- gUCGAacCGUgUGCg-CGGCGCCGUGAu -3'
miRNA:   3'- -AGCUa-GCGgACGagGUCGCGGCGCUc -5'
26324 3' -60.3 NC_005345.2 + 29704 0.66 0.435258
Target:  5'- gCGAUCGCgCUGCUgcccgagcCCGGUGCgaccgaCGCGGc -3'
miRNA:   3'- aGCUAGCG-GACGA--------GGUCGCG------GCGCUc -5'
26324 3' -60.3 NC_005345.2 + 2457 0.66 0.435258
Target:  5'- cCGGUguagGCCUGC-CCAGUccuGCgCGCGAGc -3'
miRNA:   3'- aGCUAg---CGGACGaGGUCG---CG-GCGCUC- -5'
26324 3' -60.3 NC_005345.2 + 44761 0.66 0.435258
Target:  5'- gUCGAUCGC--GCUCaugCGGCGCCGUc-- -3'
miRNA:   3'- -AGCUAGCGgaCGAG---GUCGCGGCGcuc -5'
26324 3' -60.3 NC_005345.2 + 24689 0.66 0.435258
Target:  5'- aUGAUCGCCUGa--UAGUcgGCCGcCGAGu -3'
miRNA:   3'- aGCUAGCGGACgagGUCG--CGGC-GCUC- -5'
26324 3' -60.3 NC_005345.2 + 14466 0.66 0.433375
Target:  5'- gCGAUCGCCgaugcguugaGCgugaucgucagaCCGGCGaCCGCGAc -3'
miRNA:   3'- aGCUAGCGGa---------CGa-----------GGUCGC-GGCGCUc -5'
26324 3' -60.3 NC_005345.2 + 11314 0.66 0.416647
Target:  5'- -aGAUCaagGCCcGCcgugaggCgAGCGCCGCGAGc -3'
miRNA:   3'- agCUAG---CGGaCGa------GgUCGCGGCGCUC- -5'
26324 3' -60.3 NC_005345.2 + 15064 0.66 0.416647
Target:  5'- gCGggCGCCgGcCUgCAGCGCCuGCGuGa -3'
miRNA:   3'- aGCuaGCGGaC-GAgGUCGCGG-CGCuC- -5'
26324 3' -60.3 NC_005345.2 + 34733 0.66 0.416647
Target:  5'- cUCGAUCGCCcgGCa--GGCGUCgGCGAc -3'
miRNA:   3'- -AGCUAGCGGa-CGaggUCGCGG-CGCUc -5'
26324 3' -60.3 NC_005345.2 + 19434 0.66 0.416647
Target:  5'- gUCGGUCGCaccggGCUCgGGCaGCagCGCGAu -3'
miRNA:   3'- -AGCUAGCGga---CGAGgUCG-CG--GCGCUc -5'
26324 3' -60.3 NC_005345.2 + 32476 0.66 0.412983
Target:  5'- gCGGUCGUCacccccugacggcGCUCCGGUGCCGUc-- -3'
miRNA:   3'- aGCUAGCGGa------------CGAGGUCGCGGCGcuc -5'
26324 3' -60.3 NC_005345.2 + 26137 0.66 0.407525
Target:  5'- cUCGuUCGCCggaauCUCCAGCGUCucCGGGg -3'
miRNA:   3'- -AGCuAGCGGac---GAGGUCGCGGc-GCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.