miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26324 5' -54.2 NC_005345.2 + 2852 1.08 0.001372
Target:  5'- gCGCUCGGGCGGCGAAGAACGUUUCUGu -3'
miRNA:   3'- -GCGAGCCCGCCGCUUCUUGCAAAGAC- -5'
26324 5' -54.2 NC_005345.2 + 6545 0.75 0.258775
Target:  5'- gGCg-GGGCGGUGggGGACGUggCUa -3'
miRNA:   3'- gCGagCCCGCCGCuuCUUGCAaaGAc -5'
26324 5' -54.2 NC_005345.2 + 18955 0.73 0.367054
Target:  5'- -uCUCGuGGCGGCGAGGAACGa----- -3'
miRNA:   3'- gcGAGC-CCGCCGCUUCUUGCaaagac -5'
26324 5' -54.2 NC_005345.2 + 35921 0.72 0.403219
Target:  5'- gGCUCGGgacGCGGCGAAGAaggucggcgGCGUcgUCa- -3'
miRNA:   3'- gCGAGCC---CGCCGCUUCU---------UGCAa-AGac -5'
26324 5' -54.2 NC_005345.2 + 35859 0.72 0.422128
Target:  5'- gGUUCGGGCGGgGGucgGGGGCGUcgUCg- -3'
miRNA:   3'- gCGAGCCCGCCgCU---UCUUGCAa-AGac -5'
26324 5' -54.2 NC_005345.2 + 48588 0.7 0.492243
Target:  5'- aGCUCGcGGCgGGCGAGGAcccACGccggCUGu -3'
miRNA:   3'- gCGAGC-CCG-CCGCUUCU---UGCaaa-GAC- -5'
26324 5' -54.2 NC_005345.2 + 11591 0.7 0.534637
Target:  5'- gCGcCUCGcGGUGGCGuGGGGCGgccgCUGg -3'
miRNA:   3'- -GC-GAGC-CCGCCGCuUCUUGCaaa-GAC- -5'
26324 5' -54.2 NC_005345.2 + 30131 0.69 0.578248
Target:  5'- gGCUCGGGCGGCGAcGu-CGa----- -3'
miRNA:   3'- gCGAGCCCGCCGCUuCuuGCaaagac -5'
26324 5' -54.2 NC_005345.2 + 43439 0.69 0.589285
Target:  5'- cCGCUCGcuguuGUGGCGAGGGACGgcggcgagUUCg- -3'
miRNA:   3'- -GCGAGCc----CGCCGCUUCUUGCa-------AAGac -5'
26324 5' -54.2 NC_005345.2 + 36403 0.68 0.62258
Target:  5'- cCGCggcCGGGUGGCGAucAGAugGgcgaUCUc -3'
miRNA:   3'- -GCGa--GCCCGCCGCU--UCUugCaa--AGAc -5'
26324 5' -54.2 NC_005345.2 + 38199 0.68 0.62258
Target:  5'- gGCguaGGGCGGCGGcgGGAACGg----- -3'
miRNA:   3'- gCGag-CCCGCCGCU--UCUUGCaaagac -5'
26324 5' -54.2 NC_005345.2 + 23105 0.68 0.632596
Target:  5'- gCGCUCGccgaggcgagcgaGGCGGCGAGu--CGggUCUGu -3'
miRNA:   3'- -GCGAGC-------------CCGCCGCUUcuuGCaaAGAC- -5'
26324 5' -54.2 NC_005345.2 + 14937 0.68 0.644835
Target:  5'- uGCagCGGGCGGCGgcGAaggaucgcgccGCGg--CUGa -3'
miRNA:   3'- gCGa-GCCCGCCGCuuCU-----------UGCaaaGAC- -5'
26324 5' -54.2 NC_005345.2 + 22682 0.68 0.65595
Target:  5'- uCGCUCGucguGGCGGUGAagcGGGGCGgcgUgUGg -3'
miRNA:   3'- -GCGAGC----CCGCCGCU---UCUUGCaa-AgAC- -5'
26324 5' -54.2 NC_005345.2 + 21654 0.67 0.689117
Target:  5'- gGCUCGGGCGGgGuGGGggUGa----- -3'
miRNA:   3'- gCGAGCCCGCCgC-UUCuuGCaaagac -5'
26324 5' -54.2 NC_005345.2 + 43505 0.67 0.700075
Target:  5'- cCGC-CGGGCGGUGccGAuCGggUCg- -3'
miRNA:   3'- -GCGaGCCCGCCGCuuCUuGCaaAGac -5'
26324 5' -54.2 NC_005345.2 + 22795 0.67 0.700075
Target:  5'- cCGCgCGauccuCGGCGggGGGCGggUCUGa -3'
miRNA:   3'- -GCGaGCcc---GCCGCuuCUUGCaaAGAC- -5'
26324 5' -54.2 NC_005345.2 + 3429 0.67 0.710966
Target:  5'- gCGCggcggCGGGCGGCGAugcGGGccccgagcucgcGCGgg-CUGu -3'
miRNA:   3'- -GCGa----GCCCGCCGCU---UCU------------UGCaaaGAC- -5'
26324 5' -54.2 NC_005345.2 + 3381 0.67 0.710966
Target:  5'- aGCU-GGGCGGCGAGGucCGgcgCg- -3'
miRNA:   3'- gCGAgCCCGCCGCUUCuuGCaaaGac -5'
26324 5' -54.2 NC_005345.2 + 11205 0.66 0.739943
Target:  5'- cCGCUCGGGCaccgucggcgucgaGGCGuccgcGAACGcg-CUGu -3'
miRNA:   3'- -GCGAGCCCG--------------CCGCuu---CUUGCaaaGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.