Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26324 | 5' | -54.2 | NC_005345.2 | + | 43505 | 0.67 | 0.700075 |
Target: 5'- cCGC-CGGGCGGUGccGAuCGggUCg- -3' miRNA: 3'- -GCGaGCCCGCCGCuuCUuGCaaAGac -5' |
|||||||
26324 | 5' | -54.2 | NC_005345.2 | + | 46368 | 0.66 | 0.743117 |
Target: 5'- gGCUCacgaaGGGCGGCGgcGAGCa------ -3' miRNA: 3'- gCGAG-----CCCGCCGCuuCUUGcaaagac -5' |
|||||||
26324 | 5' | -54.2 | NC_005345.2 | + | 48588 | 0.7 | 0.492243 |
Target: 5'- aGCUCGcGGCgGGCGAGGAcccACGccggCUGu -3' miRNA: 3'- gCGAGC-CCG-CCGCUUCU---UGCaaa-GAC- -5' |
|||||||
26324 | 5' | -54.2 | NC_005345.2 | + | 48898 | 0.66 | 0.757786 |
Target: 5'- gGCgaggugCGGGCGGCGAuggcucccgagaccgAGggUGUUcgaacgCUGc -3' miRNA: 3'- gCGa-----GCCCGCCGCU---------------UCuuGCAAa-----GAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home