miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26325 3' -54.6 NC_005345.2 + 34654 0.66 0.741353
Target:  5'- cCCGGUcucggccguaCCAgUCGGCGuAGUcgaggGCGUCGGg -3'
miRNA:   3'- -GGCUA----------GGUgAGCCGCuUCA-----CGCAGUU- -5'
26325 3' -54.6 NC_005345.2 + 40776 0.66 0.730709
Target:  5'- gCCGGUCgGC-CGGCGcGGGcGUGUCGc -3'
miRNA:   3'- -GGCUAGgUGaGCCGC-UUCaCGCAGUu -5'
26325 3' -54.6 NC_005345.2 + 30552 0.66 0.730709
Target:  5'- gCCGAgaCC-CUCGGCGAGGacgGCGg--- -3'
miRNA:   3'- -GGCUa-GGuGAGCCGCUUCa--CGCaguu -5'
26325 3' -54.6 NC_005345.2 + 30456 0.66 0.730709
Target:  5'- cCCGAUCCgggcacGCUgCGcGCGAucUGCGUCGc -3'
miRNA:   3'- -GGCUAGG------UGA-GC-CGCUucACGCAGUu -5'
26325 3' -54.6 NC_005345.2 + 23535 0.66 0.719965
Target:  5'- cCUGAUUCACgcucggcugUGGCGAGGUGaccuGUCGg -3'
miRNA:   3'- -GGCUAGGUGa--------GCCGCUUCACg---CAGUu -5'
26325 3' -54.6 NC_005345.2 + 21641 0.66 0.709131
Target:  5'- aUCGAUCCucagcgGCUCgGGCGggGUGgGg--- -3'
miRNA:   3'- -GGCUAGG------UGAG-CCGCuuCACgCaguu -5'
26325 3' -54.6 NC_005345.2 + 35826 0.66 0.709131
Target:  5'- cUCGGcCCGCUCGGUGggGUuCGgggCAc -3'
miRNA:   3'- -GGCUaGGUGAGCCGCuuCAcGCa--GUu -5'
26325 3' -54.6 NC_005345.2 + 48479 0.66 0.709131
Target:  5'- cCCGuacUCCACUCGGUGAauGGUcuuGUGaUCGAc -3'
miRNA:   3'- -GGCu--AGGUGAGCCGCU--UCA---CGC-AGUU- -5'
26325 3' -54.6 NC_005345.2 + 3700 0.66 0.69822
Target:  5'- gCCGucucggCCGCcggCGGCGAGGUGCa---- -3'
miRNA:   3'- -GGCua----GGUGa--GCCGCUUCACGcaguu -5'
26325 3' -54.6 NC_005345.2 + 10948 0.66 0.69822
Target:  5'- cUCGAUCgACUCGGUGuuguagucgaacAGGUGCccGUCGu -3'
miRNA:   3'- -GGCUAGgUGAGCCGC------------UUCACG--CAGUu -5'
26325 3' -54.6 NC_005345.2 + 3293 0.67 0.687243
Target:  5'- gCCG-UCCACgucgagggcgUCGGCGAgugcuucgagGGUgGCGUCAc -3'
miRNA:   3'- -GGCuAGGUG----------AGCCGCU----------UCA-CGCAGUu -5'
26325 3' -54.6 NC_005345.2 + 33022 0.67 0.687243
Target:  5'- aCGAUCgGgCUCGGCcgcGggGUGCGg--- -3'
miRNA:   3'- gGCUAGgU-GAGCCG---CuuCACGCaguu -5'
26325 3' -54.6 NC_005345.2 + 5644 0.67 0.685041
Target:  5'- gCCGGguucgCCGCgaccuuggCGGCGAucgaggucaccuGUGCGUCGGu -3'
miRNA:   3'- -GGCUa----GGUGa-------GCCGCUu-----------CACGCAGUU- -5'
26325 3' -54.6 NC_005345.2 + 33505 0.67 0.676213
Target:  5'- cCCGGUCgCAUUgCGGCcccGAccGGUGUGUCAc -3'
miRNA:   3'- -GGCUAG-GUGA-GCCG---CU--UCACGCAGUu -5'
26325 3' -54.6 NC_005345.2 + 8356 0.67 0.66403
Target:  5'- cCCGGUCguCgugagugUCGGCGAGGUGUGg--- -3'
miRNA:   3'- -GGCUAGguG-------AGCCGCUUCACGCaguu -5'
26325 3' -54.6 NC_005345.2 + 18252 0.68 0.62175
Target:  5'- aCCGGguugcagaucagcagCCACUCGcCGAucuGUGCGUCGc -3'
miRNA:   3'- -GGCUa--------------GGUGAGCcGCUu--CACGCAGUu -5'
26325 3' -54.6 NC_005345.2 + 44380 0.68 0.620637
Target:  5'- aCGggUCGC-CGGCGAgGGUGcCGUCGAg -3'
miRNA:   3'- gGCuaGGUGaGCCGCU-UCAC-GCAGUU- -5'
26325 3' -54.6 NC_005345.2 + 25544 0.68 0.609511
Target:  5'- cCCGGUCCGC-CGGCGuc--GCGcCGAa -3'
miRNA:   3'- -GGCUAGGUGaGCCGCuucaCGCaGUU- -5'
26325 3' -54.6 NC_005345.2 + 15295 0.68 0.58733
Target:  5'- gCCGAaCgC-CUCGGCGAGGUuCGUCGc -3'
miRNA:   3'- -GGCUaG-GuGAGCCGCUUCAcGCAGUu -5'
26325 3' -54.6 NC_005345.2 + 12289 0.68 0.576293
Target:  5'- cCUGGUCCGCUCGGgauCGAgugccccgAGUGCG-CGg -3'
miRNA:   3'- -GGCUAGGUGAGCC---GCU--------UCACGCaGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.