miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26325 5' -60.6 NC_005345.2 + 17259 0.66 0.418915
Target:  5'- -aCCGGGCG-GCa-GGCGcCGCGGUCc -3'
miRNA:   3'- caGGCUCGCaCGaaCCGCcGCGUCGG- -5'
26325 5' -60.6 NC_005345.2 + 15963 0.66 0.418915
Target:  5'- cGUUCG-GCGcUGCcagUUGGCGauguGCGCGGCg -3'
miRNA:   3'- -CAGGCuCGC-ACG---AACCGC----CGCGUCGg -5'
26325 5' -60.6 NC_005345.2 + 8044 0.66 0.418915
Target:  5'- --gCGGGCGUGCU--GCGGCccgcguaaaCAGCCu -3'
miRNA:   3'- cagGCUCGCACGAacCGCCGc--------GUCGG- -5'
26325 5' -60.6 NC_005345.2 + 37402 0.66 0.409738
Target:  5'- -aCCGAGCccGaCgaaGGCGGCG-AGCCg -3'
miRNA:   3'- caGGCUCGcaC-Gaa-CCGCCGCgUCGG- -5'
26325 5' -60.6 NC_005345.2 + 47361 0.66 0.409738
Target:  5'- -cCCGuGCG-GUgUGGCGaGUGCuGCCu -3'
miRNA:   3'- caGGCuCGCaCGaACCGC-CGCGuCGG- -5'
26325 5' -60.6 NC_005345.2 + 17153 0.66 0.409738
Target:  5'- gGUCgGGGCGgucgUGCcgacgggGGCGGCGUagaAGUCg -3'
miRNA:   3'- -CAGgCUCGC----ACGaa-----CCGCCGCG---UCGG- -5'
26325 5' -60.6 NC_005345.2 + 11068 0.66 0.409738
Target:  5'- aUCUGcgccuGCGUgGCgcccGGCGGCGCAauccccGCCa -3'
miRNA:   3'- cAGGCu----CGCA-CGaa--CCGCCGCGU------CGG- -5'
26325 5' -60.6 NC_005345.2 + 13481 0.66 0.408827
Target:  5'- -cCCGAcggcaccGCGUcgGUgcGGUGGCGCGGCg -3'
miRNA:   3'- caGGCU-------CGCA--CGaaCCGCCGCGUCGg -5'
26325 5' -60.6 NC_005345.2 + 35303 0.66 0.408827
Target:  5'- uGUCCgcGAGCGUggggacccggguuGCggGGCGGaCGCuGUCg -3'
miRNA:   3'- -CAGG--CUCGCA-------------CGaaCCGCC-GCGuCGG- -5'
26325 5' -60.6 NC_005345.2 + 3012 0.66 0.400686
Target:  5'- -gCCGAGgccaGUaGCcgGGCGGCgGCAGCa -3'
miRNA:   3'- caGGCUCg---CA-CGaaCCGCCG-CGUCGg -5'
26325 5' -60.6 NC_005345.2 + 14689 0.66 0.400686
Target:  5'- -gCCGGGCcggccGUGCccguggugUGGCGGCG-AGCUc -3'
miRNA:   3'- caGGCUCG-----CACGa-------ACCGCCGCgUCGG- -5'
26325 5' -60.6 NC_005345.2 + 10847 0.66 0.391764
Target:  5'- -gCCGAGC-UGCggugGGCGGacugccgcaCGCGGCg -3'
miRNA:   3'- caGGCUCGcACGaa--CCGCC---------GCGUCGg -5'
26325 5' -60.6 NC_005345.2 + 48928 0.66 0.391764
Target:  5'- -aCCGAGgGUguucgaacGCUgcgGGCGGUGUgacGCCg -3'
miRNA:   3'- caGGCUCgCA--------CGAa--CCGCCGCGu--CGG- -5'
26325 5' -60.6 NC_005345.2 + 16581 0.66 0.391764
Target:  5'- cUUCGAGCGUGCgcgGGUcaacggacuGGUgagagacggGCGGCCc -3'
miRNA:   3'- cAGGCUCGCACGaa-CCG---------CCG---------CGUCGG- -5'
26325 5' -60.6 NC_005345.2 + 3231 0.66 0.382971
Target:  5'- aGUUCGGGCagcgcacuGUGCac-GCGGCGCucgguGCCg -3'
miRNA:   3'- -CAGGCUCG--------CACGaacCGCCGCGu----CGG- -5'
26325 5' -60.6 NC_005345.2 + 16573 0.66 0.382971
Target:  5'- cGUCgCGAcgaucGCGUucaacGCUgcGGUGGCGUGGCCc -3'
miRNA:   3'- -CAG-GCU-----CGCA-----CGAa-CCGCCGCGUCGG- -5'
26325 5' -60.6 NC_005345.2 + 43963 0.66 0.382971
Target:  5'- -gCCGAuGCGUGCagcccGGCGGCucgcccgacucGuCGGCCg -3'
miRNA:   3'- caGGCU-CGCACGaa---CCGCCG-----------C-GUCGG- -5'
26325 5' -60.6 NC_005345.2 + 11635 0.66 0.382971
Target:  5'- -gCCGAGCaGgcauagacgccUGCacGGCGGCgguaGCGGCCa -3'
miRNA:   3'- caGGCUCG-C-----------ACGaaCCGCCG----CGUCGG- -5'
26325 5' -60.6 NC_005345.2 + 36816 0.66 0.374311
Target:  5'- --aCGaAGCGccucaUGCUggccGGCGGUGCAGgCCg -3'
miRNA:   3'- cagGC-UCGC-----ACGAa---CCGCCGCGUC-GG- -5'
26325 5' -60.6 NC_005345.2 + 45325 0.66 0.374311
Target:  5'- aUCCGAGcCGgcgaGCU--GCuGCGCGGCCu -3'
miRNA:   3'- cAGGCUC-GCa---CGAacCGcCGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.