miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 37241 0.67 0.475942
Target:  5'- cGUGCCGUAGU---AGCGGGCgaCGg -3'
miRNA:   3'- cCGCGGCGUCAcuuUCGUCCGgaGCg -5'
26326 3' -57.8 NC_005345.2 + 2630 0.67 0.456016
Target:  5'- cGGgGCCgaacGCGGUaccGAGGUAGGuacCCUCGCg -3'
miRNA:   3'- -CCgCGG----CGUCAc--UUUCGUCC---GGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 431 0.67 0.456016
Target:  5'- gGGCGgaCGUAGUacGGGCGGGuCCguggCGCa -3'
miRNA:   3'- -CCGCg-GCGUCAcuUUCGUCC-GGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 6544 0.67 0.456016
Target:  5'- gGGCGggGCGGUGggGGaCGuGGCUaCGCg -3'
miRNA:   3'- -CCGCggCGUCACuuUC-GU-CCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 31271 0.67 0.456016
Target:  5'- uGCGCgGguGcGggGGCGGGUg-CGCg -3'
miRNA:   3'- cCGCGgCguCaCuuUCGUCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 18287 0.67 0.496291
Target:  5'- uGCGUCGCGcUGGucGguGuCCUCGCg -3'
miRNA:   3'- cCGCGGCGUcACUuuCguCcGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 46388 0.67 0.480991
Target:  5'- aGGcCGCCGCGcGUGGcgcgcuccacauGCGGGCCgcugucaUCGCc -3'
miRNA:   3'- -CC-GCGGCGU-CACUuu----------CGUCCGG-------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 8006 0.67 0.486066
Target:  5'- cGGCgGCCGCGGUuucacGAGCucgacGGGCucgacCUCGCg -3'
miRNA:   3'- -CCG-CGGCGUCAcu---UUCG-----UCCG-----GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 31311 0.67 0.496291
Target:  5'- gGGCGCugcugCGCGGUcugGAGGGC-GGCCggaCGUg -3'
miRNA:   3'- -CCGCG-----GCGUCA---CUUUCGuCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 22033 0.67 0.486066
Target:  5'- cGGUGCCGCcGUGGcgccGAGCAugucGGCCa--- -3'
miRNA:   3'- -CCGCGGCGuCACU----UUCGU----CCGGagcg -5'
26326 3' -57.8 NC_005345.2 + 11337 0.68 0.39819
Target:  5'- aGCGCCGCgagcAGUGAGcggcaccgccaacGGCAGcaGCCccggUCGCg -3'
miRNA:   3'- cCGCGGCG----UCACUU-------------UCGUC--CGG----AGCG- -5'
26326 3' -57.8 NC_005345.2 + 27191 0.68 0.399099
Target:  5'- cGGCGCgGgCcGUGAucggcAGCGGGUCggCGCa -3'
miRNA:   3'- -CCGCGgC-GuCACUu----UCGUCCGGa-GCG- -5'
26326 3' -57.8 NC_005345.2 + 47153 0.68 0.399099
Target:  5'- aGGgGgCGCuGUGAgcGCc-GCCUCGCg -3'
miRNA:   3'- -CCgCgGCGuCACUuuCGucCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 5335 0.68 0.426996
Target:  5'- aGCGCUGCAGU----GCGGuGCCgugggCGCg -3'
miRNA:   3'- cCGCGGCGUCAcuuuCGUC-CGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 2217 0.68 0.426996
Target:  5'- uGUGCCGUGGUGAuguGGaCAGGgagaUCUUGCg -3'
miRNA:   3'- cCGCGGCGUCACUu--UC-GUCC----GGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 37830 0.68 0.417568
Target:  5'- cGGCGCuCGCcucac-GGCGGGCCUUGa -3'
miRNA:   3'- -CCGCG-GCGucacuuUCGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 20166 0.68 0.408268
Target:  5'- aGGCGgaagcgguucacCUGCAGgucgcGCAGcGCCUCGCg -3'
miRNA:   3'- -CCGC------------GGCGUCacuuuCGUC-CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 14313 0.68 0.408268
Target:  5'- aGCGCCGCgaucccGGUGAugauCAGGCCgaugggguUCGCc -3'
miRNA:   3'- cCGCGGCG------UCACUuuc-GUCCGG--------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 22155 0.68 0.436549
Target:  5'- cGCGaCGCuGUGGcGAGCAGcGCCggCGCu -3'
miRNA:   3'- cCGCgGCGuCACU-UUCGUC-CGGa-GCG- -5'
26326 3' -57.8 NC_005345.2 + 18794 0.68 0.407346
Target:  5'- gGGCuGCCGUcgggcagGGUGAcggcggcGCGGGCCUgGUa -3'
miRNA:   3'- -CCG-CGGCG-------UCACUuu-----CGUCCGGAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.