miRNA display CGI


Results 101 - 120 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 9594 0.71 0.257834
Target:  5'- gGGCGUgCGaGGUGcAGAGCgAGuGCCUCGCg -3'
miRNA:   3'- -CCGCG-GCgUCAC-UUUCG-UC-CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 25368 0.71 0.257176
Target:  5'- uGGCGUgGCAGUgccggcucgacgcGAucGCcgccGGCCUCGCc -3'
miRNA:   3'- -CCGCGgCGUCA-------------CUuuCGu---CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 37351 0.71 0.263814
Target:  5'- -aCGCCGCGGcGugcccGAGCAgcuuugcGGCCUCGCu -3'
miRNA:   3'- ccGCGGCGUCaCu----UUCGU-------CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 35009 0.71 0.292483
Target:  5'- gGGCGCUGCGgcggccacGUGggGGCGGGaCCg-GUg -3'
miRNA:   3'- -CCGCGGCGU--------CACuuUCGUCC-GGagCG- -5'
26326 3' -57.8 NC_005345.2 + 15826 0.71 0.292483
Target:  5'- cGCGaCCGC-GUGGAGaugggcGCGGGCCcgcUCGCg -3'
miRNA:   3'- cCGC-GGCGuCACUUU------CGUCCGG---AGCG- -5'
26326 3' -57.8 NC_005345.2 + 26797 0.71 0.292483
Target:  5'- cGGCGCCGC-GUc---GCAGGCgcugCUCGCc -3'
miRNA:   3'- -CCGCGGCGuCAcuuuCGUCCG----GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 27563 0.72 0.25132
Target:  5'- gGGUGCCGUucgGggGGCcgucGGGCCgucUCGCg -3'
miRNA:   3'- -CCGCGGCGucaCuuUCG----UCCGG---AGCG- -5'
26326 3' -57.8 NC_005345.2 + 11691 0.72 0.244312
Target:  5'- cGCGCUGCAGgcGGAucgacggccgaccAGCGGGCCgccgcCGCg -3'
miRNA:   3'- cCGCGGCGUCa-CUU-------------UCGUCCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 19116 0.72 0.2387
Target:  5'- gGGCGCucacCGCauGGUGGcuGCGGGCCgcauggCGCg -3'
miRNA:   3'- -CCGCG----GCG--UCACUuuCGUCCGGa-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 20428 0.72 0.232591
Target:  5'- gGGCGCCGUAccugcccccGUGGAAG-AGGUC-CGCg -3'
miRNA:   3'- -CCGCGGCGU---------CACUUUCgUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 42925 0.73 0.215051
Target:  5'- gGGCGUCGUGGUGcagguaucgGGAGguGGCCagggCGCc -3'
miRNA:   3'- -CCGCGGCGUCAC---------UUUCguCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 36126 0.73 0.197079
Target:  5'- cGGuCGCCGCAGUG--GGCAcaccgccaccgugcGGCCggcagCGCg -3'
miRNA:   3'- -CC-GCGGCGUCACuuUCGU--------------CCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 28249 0.73 0.198657
Target:  5'- gGGCGCUgucaaucgggGCAGUGAGugcgcuuuGCGGG-CUCGCg -3'
miRNA:   3'- -CCGCGG----------CGUCACUUu-------CGUCCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 32241 0.73 0.220768
Target:  5'- --aGCCGCAGcGgcAGCAGuGCCUCGa -3'
miRNA:   3'- ccgCGGCGUCaCuuUCGUC-CGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 23661 0.73 0.193439
Target:  5'- cGGCGCCGacCAG-GGucgcggccggucGGGCGGGCCgagCGCa -3'
miRNA:   3'- -CCGCGGC--GUCaCU------------UUCGUCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 14898 0.74 0.188341
Target:  5'- aGGCGgaGCAGcgGGcgAAGCGGGCCgcggCGCg -3'
miRNA:   3'- -CCGCggCGUCa-CU--UUCGUCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 34504 0.75 0.151671
Target:  5'- cGGUGCCgaggacGCGGUcGAGGCGggccgcGGCCUCGCg -3'
miRNA:   3'- -CCGCGG------CGUCAcUUUCGU------CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 22328 0.75 0.160181
Target:  5'- gGGUGCCggcaGCAGUGAugcggcGAGCAGcGCCUgcgaCGCg -3'
miRNA:   3'- -CCGCGG----CGUCACU------UUCGUC-CGGA----GCG- -5'
26326 3' -57.8 NC_005345.2 + 17269 0.75 0.155874
Target:  5'- aGGCGCCGCGGUccuGGucugcgcGCGGGUCUUGUc -3'
miRNA:   3'- -CCGCGGCGUCA---CUuu-----CGUCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 27716 0.76 0.132168
Target:  5'- uGGUGuCCGCAGacgcGGCcGGCCUCGCg -3'
miRNA:   3'- -CCGC-GGCGUCacuuUCGuCCGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.