miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 5253 0.67 0.465924
Target:  5'- cGCGCCGCcGUGGcgaugcAGCGGGacgCGCu -3'
miRNA:   3'- cCGCGGCGuCACUu-----UCGUCCggaGCG- -5'
26326 3' -57.8 NC_005345.2 + 31311 0.67 0.496291
Target:  5'- gGGCGCugcugCGCGGUcugGAGGGC-GGCCggaCGUg -3'
miRNA:   3'- -CCGCG-----GCGUCA---CUUUCGuCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 48349 0.67 0.465924
Target:  5'- gGGCGa-GCAgGUGuAAGCGGGCC-CGg -3'
miRNA:   3'- -CCGCggCGU-CACuUUCGUCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 32912 0.67 0.446223
Target:  5'- uGCGguaCGCAGccGggGGaaucgAGGCCUCGCc -3'
miRNA:   3'- cCGCg--GCGUCa-CuuUCg----UCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 10843 0.67 0.446223
Target:  5'- cGGCGCCgagcuGCGGUG--GGCGGacuGCCgcaCGCg -3'
miRNA:   3'- -CCGCGG-----CGUCACuuUCGUC---CGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 8006 0.67 0.486066
Target:  5'- cGGCgGCCGCGGUuucacGAGCucgacGGGCucgacCUCGCg -3'
miRNA:   3'- -CCG-CGGCGUCAcu---UUCG-----UCCG-----GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 14960 0.67 0.496291
Target:  5'- cGCGCCGCGGcUGAucagucGGUcgGGGCCcCGg -3'
miRNA:   3'- cCGCGGCGUC-ACUu-----UCG--UCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 34280 0.67 0.446223
Target:  5'- cGGCuGCgCGCGGUGAAggaccccguaaAGCAGucgcagcucGCCgUCGCc -3'
miRNA:   3'- -CCG-CG-GCGUCACUU-----------UCGUC---------CGG-AGCG- -5'
26326 3' -57.8 NC_005345.2 + 46556 0.67 0.450126
Target:  5'- uGGCuuGCCGUGGUcuuugcGGAGCAGgugggucauguacacGCCUCGCg -3'
miRNA:   3'- -CCG--CGGCGUCAc-----UUUCGUC---------------CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 2630 0.67 0.456016
Target:  5'- cGGgGCCgaacGCGGUaccGAGGUAGGuacCCUCGCg -3'
miRNA:   3'- -CCgCGG----CGUCAc--UUUCGUCC---GGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 431 0.67 0.456016
Target:  5'- gGGCGgaCGUAGUacGGGCGGGuCCguggCGCa -3'
miRNA:   3'- -CCGCg-GCGUCAcuUUCGUCC-GGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 6544 0.67 0.456016
Target:  5'- gGGCGggGCGGUGggGGaCGuGGCUaCGCg -3'
miRNA:   3'- -CCGCggCGUCACuuUC-GU-CCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 31271 0.67 0.456016
Target:  5'- uGCGCgGguGcGggGGCGGGUg-CGCg -3'
miRNA:   3'- cCGCGgCguCaCuuUCGUCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 32893 0.67 0.465924
Target:  5'- cGGC-CCGCAGgcUGggGGCgcugcGGGCCggUCGa -3'
miRNA:   3'- -CCGcGGCGUC--ACuuUCG-----UCCGG--AGCg -5'
26326 3' -57.8 NC_005345.2 + 37241 0.67 0.475942
Target:  5'- cGUGCCGUAGU---AGCGGGCgaCGg -3'
miRNA:   3'- cCGCGGCGUCAcuuUCGUCCGgaGCg -5'
26326 3' -57.8 NC_005345.2 + 22033 0.67 0.486066
Target:  5'- cGGUGCCGCcGUGGcgccGAGCAugucGGCCa--- -3'
miRNA:   3'- -CCGCGGCGuCACU----UUCGU----CCGGagcg -5'
26326 3' -57.8 NC_005345.2 + 18287 0.67 0.496291
Target:  5'- uGCGUCGCGcUGGucGguGuCCUCGCg -3'
miRNA:   3'- cCGCGGCGUcACUuuCguCcGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 45153 0.66 0.559452
Target:  5'- cGCGCUGCGGcucguccGAcCGGGCCUCGa -3'
miRNA:   3'- cCGCGGCGUCacu----UUcGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 33359 0.66 0.538095
Target:  5'- cGGCGCgagaGgGGUGggGGC-GGUggCGCg -3'
miRNA:   3'- -CCGCGg---CgUCACuuUCGuCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 27920 0.66 0.506612
Target:  5'- cGGUGUCGCuuccGAgcGCGGuGCCUCGa -3'
miRNA:   3'- -CCGCGGCGuca-CUuuCGUC-CGGAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.