miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 46687 0.7 0.330666
Target:  5'- cGCG-CGCAG-GAcuGGGCAGGCCUacaccgggaCGCg -3'
miRNA:   3'- cCGCgGCGUCaCU--UUCGUCCGGA---------GCG- -5'
26326 3' -57.8 NC_005345.2 + 45977 0.7 0.337106
Target:  5'- cGCGCCucgcuuucucucuGguGUGguGGCGGGCCcucggggUCGCu -3'
miRNA:   3'- cCGCGG-------------CguCACuuUCGUCCGG-------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 16399 0.7 0.33873
Target:  5'- cGGCucguacaCCGCuGUGAgcAAGCGGGCCcaCGCc -3'
miRNA:   3'- -CCGc------GGCGuCACU--UUCGUCCGGa-GCG- -5'
26326 3' -57.8 NC_005345.2 + 3051 0.7 0.33873
Target:  5'- gGGuCGCCGC-GUGGAuguccgcGCAGGCCcCGg -3'
miRNA:   3'- -CC-GCGGCGuCACUUu------CGUCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 33126 0.7 0.339544
Target:  5'- -uCGCCGCGGgucucacccucGCGGGCCUCGg -3'
miRNA:   3'- ccGCGGCGUCacuuu------CGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 2750 0.69 0.346109
Target:  5'- cGGC-CCGCAuGUGGAgcgcgccacgcgcGGC-GGCCUCGg -3'
miRNA:   3'- -CCGcGGCGU-CACUU-------------UCGuCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 9708 0.69 0.346936
Target:  5'- gGGcCGCCGC-GUGAGccgcgccgcGCGGGCCgcgacCGCg -3'
miRNA:   3'- -CC-GCGGCGuCACUUu--------CGUCCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 5891 0.69 0.346936
Target:  5'- uGGCGUCGUccuccuggucGGUGAugaauGCGGGCCacgacagcgggUCGCc -3'
miRNA:   3'- -CCGCGGCG----------UCACUuu---CGUCCGG-----------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 39778 0.69 0.346936
Target:  5'- cGGCuGcCCGUAGUGGucGAGCccGGCCgccCGCa -3'
miRNA:   3'- -CCG-C-GGCGUCACU--UUCGu-CCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 48671 0.69 0.355283
Target:  5'- cGGCGCacauggaucccUGCAaucaaGGcuGCAGGCCUCGCc -3'
miRNA:   3'- -CCGCG-----------GCGUca---CUuuCGUCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 11589 0.69 0.355283
Target:  5'- gGGCGCCucGCGGUGGcgugGGGC-GGCCgcugGCg -3'
miRNA:   3'- -CCGCGG--CGUCACU----UUCGuCCGGag--CG- -5'
26326 3' -57.8 NC_005345.2 + 11437 0.69 0.355283
Target:  5'- cGCGCCGCAGcgcGAucccGCAGGaCUgGCg -3'
miRNA:   3'- cCGCGGCGUCa--CUuu--CGUCCgGAgCG- -5'
26326 3' -57.8 NC_005345.2 + 36330 0.69 0.36377
Target:  5'- uGCGgCGCAGgcGAAccGGCGGGCCgaGCg -3'
miRNA:   3'- cCGCgGCGUCa-CUU--UCGUCCGGagCG- -5'
26326 3' -57.8 NC_005345.2 + 24637 0.69 0.382045
Target:  5'- gGGCGCCucGCGGUGGucgaccaggaucccGCGGGCC-CGg -3'
miRNA:   3'- -CCGCGG--CGUCACUuu------------CGUCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 31193 0.69 0.390063
Target:  5'- gGGCGCgGCGGgugcGGCGGGUg-CGCa -3'
miRNA:   3'- -CCGCGgCGUCacuuUCGUCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 34417 0.69 0.390063
Target:  5'- cGGCGCCGCGGaccGGAu--GGGCgaCGCg -3'
miRNA:   3'- -CCGCGGCGUCa--CUUucgUCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 11337 0.68 0.39819
Target:  5'- aGCGCCGCgagcAGUGAGcggcaccgccaacGGCAGcaGCCccggUCGCg -3'
miRNA:   3'- cCGCGGCG----UCACUU-------------UCGUC--CGG----AGCG- -5'
26326 3' -57.8 NC_005345.2 + 27191 0.68 0.399099
Target:  5'- cGGCGCgGgCcGUGAucggcAGCGGGUCggCGCa -3'
miRNA:   3'- -CCGCGgC-GuCACUu----UCGUCCGGa-GCG- -5'
26326 3' -57.8 NC_005345.2 + 47153 0.68 0.399099
Target:  5'- aGGgGgCGCuGUGAgcGCc-GCCUCGCg -3'
miRNA:   3'- -CCgCgGCGuCACUuuCGucCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 4178 0.68 0.399099
Target:  5'- aGGCGCuCaCGG-GgcGGCAGGCCgUGCa -3'
miRNA:   3'- -CCGCG-GcGUCaCuuUCGUCCGGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.