miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 9979 0.68 0.399099
Target:  5'- uGGgGuCCGCcucgaccacGUGAAAGCgaAGaGCCUCGCc -3'
miRNA:   3'- -CCgC-GGCGu--------CACUUUCG--UC-CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 8507 0.68 0.399099
Target:  5'- cGGCGUCcacugGCAGUGGAcgGGCc-GCCUCGa -3'
miRNA:   3'- -CCGCGG-----CGUCACUU--UCGucCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 18794 0.68 0.407346
Target:  5'- gGGCuGCCGUcgggcagGGUGAcggcggcGCGGGCCUgGUa -3'
miRNA:   3'- -CCG-CGGCG-------UCACUuu-----CGUCCGGAgCG- -5'
26326 3' -57.8 NC_005345.2 + 14313 0.68 0.408268
Target:  5'- aGCGCCGCgaucccGGUGAugauCAGGCCgaugggguUCGCc -3'
miRNA:   3'- cCGCGGCG------UCACUuuc-GUCCGG--------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 20166 0.68 0.408268
Target:  5'- aGGCGgaagcgguucacCUGCAGgucgcGCAGcGCCUCGCg -3'
miRNA:   3'- -CCGC------------GGCGUCacuuuCGUC-CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 22876 0.68 0.415698
Target:  5'- gGGCGCCGUucguccuGGUcgucgacGAGAGCGuGCCgcagCGCg -3'
miRNA:   3'- -CCGCGGCG-------UCA-------CUUUCGUcCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 37830 0.68 0.417568
Target:  5'- cGGCGCuCGCcucac-GGCGGGCCUUGa -3'
miRNA:   3'- -CCGCG-GCGucacuuUCGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 34758 0.68 0.417568
Target:  5'- cGGCgGCgGCGGUGAc-GCGcGGCUaCGCg -3'
miRNA:   3'- -CCG-CGgCGUCACUuuCGU-CCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 1675 0.68 0.426996
Target:  5'- cGGCGUCGUAcGgccgGAaguuGAGCGGGUCgagaggCGCg -3'
miRNA:   3'- -CCGCGGCGU-Ca---CU----UUCGUCCGGa-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 4389 0.68 0.426996
Target:  5'- cGGCGCCGCA-UGAgcGCgaucgacaAGGCC-CGg -3'
miRNA:   3'- -CCGCGGCGUcACUuuCG--------UCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 2217 0.68 0.426996
Target:  5'- uGUGCCGUGGUGAuguGGaCAGGgagaUCUUGCg -3'
miRNA:   3'- cCGCGGCGUCACUu--UC-GUCC----GGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 5335 0.68 0.426996
Target:  5'- aGCGCUGCAGU----GCGGuGCCgugggCGCg -3'
miRNA:   3'- cCGCGGCGUCAcuuuCGUC-CGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 6379 0.68 0.43367
Target:  5'- uGGCGuuGCGGUcccaugugaugugcGGAAucgcuuucGCGGGCC-CGCc -3'
miRNA:   3'- -CCGCggCGUCA--------------CUUU--------CGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 32198 0.68 0.434628
Target:  5'- aGGUGCCGCAGgcgucucgucGAGC-GGCCggcCGUa -3'
miRNA:   3'- -CCGCGGCGUCacu-------UUCGuCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 48005 0.68 0.435588
Target:  5'- cGCGgCGCGGUGGugucccaggcuccGGGgAGGCUaCGCg -3'
miRNA:   3'- cCGCgGCGUCACU-------------UUCgUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 22155 0.68 0.436549
Target:  5'- cGCGaCGCuGUGGcGAGCAGcGCCggCGCu -3'
miRNA:   3'- cCGCgGCGuCACU-UUCGUC-CGGa-GCG- -5'
26326 3' -57.8 NC_005345.2 + 32912 0.67 0.446223
Target:  5'- uGCGguaCGCAGccGggGGaaucgAGGCCUCGCc -3'
miRNA:   3'- cCGCg--GCGUCa-CuuUCg----UCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 10843 0.67 0.446223
Target:  5'- cGGCGCCgagcuGCGGUG--GGCGGacuGCCgcaCGCg -3'
miRNA:   3'- -CCGCGG-----CGUCACuuUCGUC---CGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 34280 0.67 0.446223
Target:  5'- cGGCuGCgCGCGGUGAAggaccccguaaAGCAGucgcagcucGCCgUCGCc -3'
miRNA:   3'- -CCG-CG-GCGUCACUU-----------UCGUC---------CGG-AGCG- -5'
26326 3' -57.8 NC_005345.2 + 46556 0.67 0.450126
Target:  5'- uGGCuuGCCGUGGUcuuugcGGAGCAGgugggucauguacacGCCUCGCg -3'
miRNA:   3'- -CCG--CGGCGUCAc-----UUUCGUC---------------CGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.