miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 2750 0.69 0.346109
Target:  5'- cGGC-CCGCAuGUGGAgcgcgccacgcgcGGC-GGCCUCGg -3'
miRNA:   3'- -CCGcGGCGU-CACUU-------------UCGuCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 33126 0.7 0.339544
Target:  5'- -uCGCCGCGGgucucacccucGCGGGCCUCGg -3'
miRNA:   3'- ccGCGGCGUCacuuu------CGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 3051 0.7 0.33873
Target:  5'- gGGuCGCCGC-GUGGAuguccgcGCAGGCCcCGg -3'
miRNA:   3'- -CC-GCGGCGuCACUUu------CGUCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 16399 0.7 0.33873
Target:  5'- cGGCucguacaCCGCuGUGAgcAAGCGGGCCcaCGCc -3'
miRNA:   3'- -CCGc------GGCGuCACU--UUCGUCCGGa-GCG- -5'
26326 3' -57.8 NC_005345.2 + 45977 0.7 0.337106
Target:  5'- cGCGCCucgcuuucucucuGguGUGguGGCGGGCCcucggggUCGCu -3'
miRNA:   3'- cCGCGG-------------CguCACuuUCGUCCGG-------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 9964 0.7 0.330666
Target:  5'- cGCG-CGCGGUGAGcucguGUAGGCgUCGUc -3'
miRNA:   3'- cCGCgGCGUCACUUu----CGUCCGgAGCG- -5'
26326 3' -57.8 NC_005345.2 + 46687 0.7 0.330666
Target:  5'- cGCG-CGCAG-GAcuGGGCAGGCCUacaccgggaCGCg -3'
miRNA:   3'- cCGCgGCGUCaCU--UUCGUCCGGA---------GCG- -5'
26326 3' -57.8 NC_005345.2 + 27997 0.7 0.322745
Target:  5'- gGGCGUCGCGuagggcGUcGAGGaugcggagcgcGCAGGCCUCGa -3'
miRNA:   3'- -CCGCGGCGU------CA-CUUU-----------CGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 37576 0.7 0.322745
Target:  5'- gGGCGCagGCGGgcUGcAGGCGGGCgaccggCUCGCg -3'
miRNA:   3'- -CCGCGg-CGUC--ACuUUCGUCCG------GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 10296 0.7 0.320396
Target:  5'- cGGCGCgGgCuGUGGGAGC-GGCCcggcacgagcguguUCGCg -3'
miRNA:   3'- -CCGCGgC-GuCACUUUCGuCCGG--------------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 44874 0.7 0.314966
Target:  5'- cGGCgGCCGCGucGcGAGgcgcAGCAacguGGCCUCGCc -3'
miRNA:   3'- -CCG-CGGCGU--CaCUU----UCGU----CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 28972 0.7 0.314966
Target:  5'- aGGCcccGCCGCAucgGAAugcGGCGGGgCUCGUg -3'
miRNA:   3'- -CCG---CGGCGUca-CUU---UCGUCCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 36186 0.7 0.314966
Target:  5'- uGGuCGCCGguGguccuGCAGGCCcUGCa -3'
miRNA:   3'- -CC-GCGGCguCacuuuCGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 48562 0.7 0.314966
Target:  5'- gGGCGUCGCGGau---GCGGGCgccgaugagCUCGCg -3'
miRNA:   3'- -CCGCGGCGUCacuuuCGUCCG---------GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 3427 0.7 0.299835
Target:  5'- gGGCGCgGCGGcGGGcggcgauGCGGGCCccgagcUCGCg -3'
miRNA:   3'- -CCGCGgCGUCaCUUu------CGUCCGG------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 8587 0.7 0.299835
Target:  5'- gGGCGUCaCAGUGA--GCAGGUCggGCa -3'
miRNA:   3'- -CCGCGGcGUCACUuuCGUCCGGagCG- -5'
26326 3' -57.8 NC_005345.2 + 30708 0.7 0.299835
Target:  5'- gGGUgGCCGCGGUGAucGGCgAGGaCCUgcugcCGCa -3'
miRNA:   3'- -CCG-CGGCGUCACUu-UCG-UCC-GGA-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 15826 0.71 0.292483
Target:  5'- cGCGaCCGC-GUGGAGaugggcGCGGGCCcgcUCGCg -3'
miRNA:   3'- cCGC-GGCGuCACUUU------CGUCCGG---AGCG- -5'
26326 3' -57.8 NC_005345.2 + 35009 0.71 0.292483
Target:  5'- gGGCGCUGCGgcggccacGUGggGGCGGGaCCg-GUg -3'
miRNA:   3'- -CCGCGGCGU--------CACuuUCGUCC-GGagCG- -5'
26326 3' -57.8 NC_005345.2 + 26797 0.71 0.292483
Target:  5'- cGGCGCCGC-GUc---GCAGGCgcugCUCGCc -3'
miRNA:   3'- -CCGCGGCGuCAcuuuCGUCCG----GAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.