miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 14960 0.67 0.496291
Target:  5'- cGCGCCGCGGcUGAucagucGGUcgGGGCCcCGg -3'
miRNA:   3'- cCGCGGCGUC-ACUu-----UCG--UCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 15080 0.66 0.517024
Target:  5'- aGCGCCuGC-GUGAu--CAGGCCUacCGCc -3'
miRNA:   3'- cCGCGG-CGuCACUuucGUCCGGA--GCG- -5'
26326 3' -57.8 NC_005345.2 + 15826 0.71 0.292483
Target:  5'- cGCGaCCGC-GUGGAGaugggcGCGGGCCcgcUCGCg -3'
miRNA:   3'- cCGC-GGCGuCACUUU------CGUCCGG---AGCG- -5'
26326 3' -57.8 NC_005345.2 + 16136 0.66 0.563754
Target:  5'- cGGCGUCccgGCGGUacaGAucGCuaagacgcacgccguAGGUCUCGCg -3'
miRNA:   3'- -CCGCGG---CGUCA---CUuuCG---------------UCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 16366 0.77 0.102789
Target:  5'- cGGCGCCGCGGUGAucGCGacgaucGGgUUCGUc -3'
miRNA:   3'- -CCGCGGCGUCACUuuCGU------CCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 16399 0.7 0.33873
Target:  5'- cGGCucguacaCCGCuGUGAgcAAGCGGGCCcaCGCc -3'
miRNA:   3'- -CCGc------GGCGuCACU--UUCGUCCGGa-GCG- -5'
26326 3' -57.8 NC_005345.2 + 17269 0.75 0.155874
Target:  5'- aGGCGCCGCGGUccuGGucugcgcGCGGGUCUUGUc -3'
miRNA:   3'- -CCGCGGCGUCA---CUuu-----CGUCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 17489 0.66 0.559452
Target:  5'- cGGCGUCGggaAG-GAAcuGCGGGCCgccggUCGCc -3'
miRNA:   3'- -CCGCGGCg--UCaCUUu-CGUCCGG-----AGCG- -5'
26326 3' -57.8 NC_005345.2 + 18217 0.71 0.278204
Target:  5'- gGGCGCCGC-GUucGGGUAcGGgCUCGCc -3'
miRNA:   3'- -CCGCGGCGuCAcuUUCGU-CCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 18287 0.67 0.496291
Target:  5'- uGCGUCGCGcUGGucGguGuCCUCGCg -3'
miRNA:   3'- cCGCGGCGUcACUuuCguCcGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 18452 0.66 0.52752
Target:  5'- uGCGCCcGUGGUGGAc-CGGGUCcCGCg -3'
miRNA:   3'- cCGCGG-CGUCACUUucGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 18528 0.66 0.52752
Target:  5'- cGGCGCCaugugcacCGGUGGGcuGCucgGGGCgCUCGCc -3'
miRNA:   3'- -CCGCGGc-------GUCACUUu-CG---UCCG-GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 18794 0.68 0.407346
Target:  5'- gGGCuGCCGUcgggcagGGUGAcggcggcGCGGGCCUgGUa -3'
miRNA:   3'- -CCG-CGGCG-------UCACUuu-----CGUCCGGAgCG- -5'
26326 3' -57.8 NC_005345.2 + 19116 0.72 0.2387
Target:  5'- gGGCGCucacCGCauGGUGGcuGCGGGCCgcauggCGCg -3'
miRNA:   3'- -CCGCG----GCG--UCACUuuCGUCCGGa-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 20166 0.68 0.408268
Target:  5'- aGGCGgaagcgguucacCUGCAGgucgcGCAGcGCCUCGCg -3'
miRNA:   3'- -CCGC------------GGCGUCacuuuCGUC-CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 20428 0.72 0.232591
Target:  5'- gGGCGCCGUAccugcccccGUGGAAG-AGGUC-CGCg -3'
miRNA:   3'- -CCGCGGCGU---------CACUUUCgUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 22033 0.67 0.486066
Target:  5'- cGGUGCCGCcGUGGcgccGAGCAugucGGCCa--- -3'
miRNA:   3'- -CCGCGGCGuCACU----UUCGU----CCGGagcg -5'
26326 3' -57.8 NC_005345.2 + 22155 0.68 0.436549
Target:  5'- cGCGaCGCuGUGGcGAGCAGcGCCggCGCu -3'
miRNA:   3'- cCGCgGCGuCACU-UUCGUC-CGGa-GCG- -5'
26326 3' -57.8 NC_005345.2 + 22328 0.75 0.160181
Target:  5'- gGGUGCCggcaGCAGUGAugcggcGAGCAGcGCCUgcgaCGCg -3'
miRNA:   3'- -CCGCGG----CGUCACU------UUCGUC-CGGA----GCG- -5'
26326 3' -57.8 NC_005345.2 + 22617 0.66 0.548741
Target:  5'- uGCGCCuGCGGUGGuu-CcGGCgCUCGUg -3'
miRNA:   3'- cCGCGG-CGUCACUuucGuCCG-GAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.