miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 30708 0.7 0.299835
Target:  5'- gGGUgGCCGCGGUGAucGGCgAGGaCCUgcugcCGCa -3'
miRNA:   3'- -CCG-CGGCGUCACUu-UCG-UCC-GGA-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 31141 0.66 0.538095
Target:  5'- cGGCGuCCGaCAGgc--GGUcgAGGCCUCGa -3'
miRNA:   3'- -CCGC-GGC-GUCacuuUCG--UCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 31193 0.69 0.390063
Target:  5'- gGGCGCgGCGGgugcGGCGGGUg-CGCa -3'
miRNA:   3'- -CCGCGgCGUCacuuUCGUCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 31271 0.67 0.456016
Target:  5'- uGCGCgGguGcGggGGCGGGUg-CGCg -3'
miRNA:   3'- cCGCGgCguCaCuuUCGUCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 31311 0.67 0.496291
Target:  5'- gGGCGCugcugCGCGGUcugGAGGGC-GGCCggaCGUg -3'
miRNA:   3'- -CCGCG-----GCGUCA---CUUUCGuCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 31460 0.78 0.094177
Target:  5'- aGGCGCCGgGGUGcggguguGAGGCGGGCgagCGCg -3'
miRNA:   3'- -CCGCGGCgUCAC-------UUUCGUCCGga-GCG- -5'
26326 3' -57.8 NC_005345.2 + 32198 0.68 0.434628
Target:  5'- aGGUGCCGCAGgcgucucgucGAGC-GGCCggcCGUa -3'
miRNA:   3'- -CCGCGGCGUCacu-------UUCGuCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 32241 0.73 0.220768
Target:  5'- --aGCCGCAGcGgcAGCAGuGCCUCGa -3'
miRNA:   3'- ccgCGGCGUCaCuuUCGUC-CGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 32893 0.67 0.465924
Target:  5'- cGGC-CCGCAGgcUGggGGCgcugcGGGCCggUCGa -3'
miRNA:   3'- -CCGcGGCGUC--ACuuUCG-----UCCGG--AGCg -5'
26326 3' -57.8 NC_005345.2 + 32912 0.67 0.446223
Target:  5'- uGCGguaCGCAGccGggGGaaucgAGGCCUCGCc -3'
miRNA:   3'- cCGCg--GCGUCa-CuuUCg----UCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 33126 0.7 0.339544
Target:  5'- -uCGCCGCGGgucucacccucGCGGGCCUCGg -3'
miRNA:   3'- ccGCGGCGUCacuuu------CGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 33359 0.66 0.538095
Target:  5'- cGGCGCgagaGgGGUGggGGC-GGUggCGCg -3'
miRNA:   3'- -CCGCGg---CgUCACuuUCGuCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 33391 0.67 0.475942
Target:  5'- uGGCuacaGCCGCGGUcGAGGUcGGCgUCGg -3'
miRNA:   3'- -CCG----CGGCGUCAcUUUCGuCCGgAGCg -5'
26326 3' -57.8 NC_005345.2 + 34280 0.67 0.446223
Target:  5'- cGGCuGCgCGCGGUGAAggaccccguaaAGCAGucgcagcucGCCgUCGCc -3'
miRNA:   3'- -CCG-CG-GCGUCACUU-----------UCGUC---------CGG-AGCG- -5'
26326 3' -57.8 NC_005345.2 + 34417 0.69 0.390063
Target:  5'- cGGCGCCGCGGaccGGAu--GGGCgaCGCg -3'
miRNA:   3'- -CCGCGGCGUCa--CUUucgUCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 34504 0.75 0.151671
Target:  5'- cGGUGCCgaggacGCGGUcGAGGCGggccgcGGCCUCGCg -3'
miRNA:   3'- -CCGCGG------CGUCAcUUUCGU------CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 34758 0.68 0.417568
Target:  5'- cGGCgGCgGCGGUGAc-GCGcGGCUaCGCg -3'
miRNA:   3'- -CCG-CGgCGUCACUuuCGU-CCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 35009 0.71 0.292483
Target:  5'- gGGCGCUGCGgcggccacGUGggGGCGGGaCCg-GUg -3'
miRNA:   3'- -CCGCGGCGU--------CACuuUCGUCC-GGagCG- -5'
26326 3' -57.8 NC_005345.2 + 35211 0.66 0.52752
Target:  5'- gGGCGCUaucugGCuGUGGAAGUcGGCgCUCa- -3'
miRNA:   3'- -CCGCGG-----CGuCACUUUCGuCCG-GAGcg -5'
26326 3' -57.8 NC_005345.2 + 36126 0.73 0.197079
Target:  5'- cGGuCGCCGCAGUG--GGCAcaccgccaccgugcGGCCggcagCGCg -3'
miRNA:   3'- -CC-GCGGCGUCACuuUCGU--------------CCGGa----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.