miRNA display CGI


Results 101 - 120 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 36186 0.7 0.314966
Target:  5'- uGGuCGCCGguGguccuGCAGGCCcUGCa -3'
miRNA:   3'- -CC-GCGGCguCacuuuCGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 36330 0.69 0.36377
Target:  5'- uGCGgCGCAGgcGAAccGGCGGGCCgaGCg -3'
miRNA:   3'- cCGCgGCGUCa-CUU--UCGUCCGGagCG- -5'
26326 3' -57.8 NC_005345.2 + 37241 0.67 0.475942
Target:  5'- cGUGCCGUAGU---AGCGGGCgaCGg -3'
miRNA:   3'- cCGCGGCGUCAcuuUCGUCCGgaGCg -5'
26326 3' -57.8 NC_005345.2 + 37351 0.71 0.263814
Target:  5'- -aCGCCGCGGcGugcccGAGCAgcuuugcGGCCUCGCu -3'
miRNA:   3'- ccGCGGCGUCaCu----UUCGU-------CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 37576 0.7 0.322745
Target:  5'- gGGCGCagGCGGgcUGcAGGCGGGCgaccggCUCGCg -3'
miRNA:   3'- -CCGCGg-CGUC--ACuUUCGUCCG------GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 37830 0.68 0.417568
Target:  5'- cGGCGCuCGCcucac-GGCGGGCCUUGa -3'
miRNA:   3'- -CCGCG-GCGucacuuUCGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 38448 0.66 0.548741
Target:  5'- aGCuGCCGCAG-GAcAGGcCGGGCacagCGCg -3'
miRNA:   3'- cCG-CGGCGUCaCU-UUC-GUCCGga--GCG- -5'
26326 3' -57.8 NC_005345.2 + 39513 0.66 0.538095
Target:  5'- gGGUGCCcgAGUGGacccggccgaucGAGCAGGUCgUGCa -3'
miRNA:   3'- -CCGCGGcgUCACU------------UUCGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 39778 0.69 0.346936
Target:  5'- cGGCuGcCCGUAGUGGucGAGCccGGCCgccCGCa -3'
miRNA:   3'- -CCG-C-GGCGUCACU--UUCGu-CCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 40265 0.66 0.52752
Target:  5'- gGGCGCCgGCGGgcaugaguccgGAGAGCGucauGCCgCGCc -3'
miRNA:   3'- -CCGCGG-CGUCa----------CUUUCGUc---CGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 42925 0.73 0.215051
Target:  5'- gGGCGUCGUGGUGcagguaucgGGAGguGGCCagggCGCc -3'
miRNA:   3'- -CCGCGGCGUCAC---------UUUCguCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 43698 0.66 0.506612
Target:  5'- -uCGCCGC-GUG--GGCcGGCCUCGa -3'
miRNA:   3'- ccGCGGCGuCACuuUCGuCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 43722 0.66 0.548741
Target:  5'- gGGCGCCGCcgaagaacucGGcGAGAcGCucGGCCgacCGCc -3'
miRNA:   3'- -CCGCGGCG----------UCaCUUU-CGu-CCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 44874 0.7 0.314966
Target:  5'- cGGCgGCCGCGucGcGAGgcgcAGCAacguGGCCUCGCc -3'
miRNA:   3'- -CCG-CGGCGU--CaCUU----UCGU----CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 45153 0.66 0.559452
Target:  5'- cGCGCUGCGGcucguccGAcCGGGCCUCGa -3'
miRNA:   3'- cCGCGGCGUCacu----UUcGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 45558 0.66 0.517024
Target:  5'- aGCgGCCGaGGUcGGGGCGGGCCggUUGCg -3'
miRNA:   3'- cCG-CGGCgUCAcUUUCGUCCGG--AGCG- -5'
26326 3' -57.8 NC_005345.2 + 45977 0.7 0.337106
Target:  5'- cGCGCCucgcuuucucucuGguGUGguGGCGGGCCcucggggUCGCu -3'
miRNA:   3'- cCGCGG-------------CguCACuuUCGUCCGG-------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 46388 0.67 0.480991
Target:  5'- aGGcCGCCGCGcGUGGcgcgcuccacauGCGGGCCgcugucaUCGCc -3'
miRNA:   3'- -CC-GCGGCGU-CACUuu----------CGUCCGG-------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 46556 0.67 0.450126
Target:  5'- uGGCuuGCCGUGGUcuuugcGGAGCAGgugggucauguacacGCCUCGCg -3'
miRNA:   3'- -CCG--CGGCGUCAc-----UUUCGUC---------------CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 46687 0.7 0.330666
Target:  5'- cGCG-CGCAG-GAcuGGGCAGGCCUacaccgggaCGCg -3'
miRNA:   3'- cCGCgGCGUCaCU--UUCGUCCGGA---------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.