miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 16399 0.7 0.33873
Target:  5'- cGGCucguacaCCGCuGUGAgcAAGCGGGCCcaCGCc -3'
miRNA:   3'- -CCGc------GGCGuCACU--UUCGUCCGGa-GCG- -5'
26326 3' -57.8 NC_005345.2 + 16366 0.77 0.102789
Target:  5'- cGGCGCCGCGGUGAucGCGacgaucGGgUUCGUc -3'
miRNA:   3'- -CCGCGGCGUCACUuuCGU------CCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 16136 0.66 0.563754
Target:  5'- cGGCGUCccgGCGGUacaGAucGCuaagacgcacgccguAGGUCUCGCg -3'
miRNA:   3'- -CCGCGG---CGUCA---CUuuCG---------------UCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 15826 0.71 0.292483
Target:  5'- cGCGaCCGC-GUGGAGaugggcGCGGGCCcgcUCGCg -3'
miRNA:   3'- cCGC-GGCGuCACUUU------CGUCCGG---AGCG- -5'
26326 3' -57.8 NC_005345.2 + 15080 0.66 0.517024
Target:  5'- aGCGCCuGC-GUGAu--CAGGCCUacCGCc -3'
miRNA:   3'- cCGCGG-CGuCACUuucGUCCGGA--GCG- -5'
26326 3' -57.8 NC_005345.2 + 14960 0.67 0.496291
Target:  5'- cGCGCCGCGGcUGAucagucGGUcgGGGCCcCGg -3'
miRNA:   3'- cCGCGGCGUC-ACUu-----UCG--UCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 14898 0.74 0.188341
Target:  5'- aGGCGgaGCAGcgGGcgAAGCGGGCCgcggCGCg -3'
miRNA:   3'- -CCGCggCGUCa-CU--UUCGUCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 14820 0.66 0.517024
Target:  5'- gGGCGCgGguGUGGucgacgcccGAGCAGcuuGCCggGCu -3'
miRNA:   3'- -CCGCGgCguCACU---------UUCGUC---CGGagCG- -5'
26326 3' -57.8 NC_005345.2 + 14313 0.68 0.408268
Target:  5'- aGCGCCGCgaucccGGUGAugauCAGGCCgaugggguUCGCc -3'
miRNA:   3'- cCGCGGCG------UCACUuuc-GUCCGG--------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 14196 0.79 0.081944
Target:  5'- aGGaCGCCGCcgaGGUGuccgccGAGCAGGCCcUCGCc -3'
miRNA:   3'- -CC-GCGGCG---UCACu-----UUCGUCCGG-AGCG- -5'
26326 3' -57.8 NC_005345.2 + 12875 0.67 0.475942
Target:  5'- uGGCucGCCGCcgGGUGGccGCucGCCUCGa -3'
miRNA:   3'- -CCG--CGGCG--UCACUuuCGucCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 11846 0.66 0.548741
Target:  5'- -cCGCUGCuGUGAGAGCAG-CC-CGg -3'
miRNA:   3'- ccGCGGCGuCACUUUCGUCcGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 11691 0.72 0.244312
Target:  5'- cGCGCUGCAGgcGGAucgacggccgaccAGCGGGCCgccgcCGCg -3'
miRNA:   3'- cCGCGGCGUCa-CUU-------------UCGUCCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 11589 0.69 0.355283
Target:  5'- gGGCGCCucGCGGUGGcgugGGGC-GGCCgcugGCg -3'
miRNA:   3'- -CCGCGG--CGUCACU----UUCGuCCGGag--CG- -5'
26326 3' -57.8 NC_005345.2 + 11437 0.69 0.355283
Target:  5'- cGCGCCGCAGcgcGAucccGCAGGaCUgGCg -3'
miRNA:   3'- cCGCGGCGUCa--CUuu--CGUCCgGAgCG- -5'
26326 3' -57.8 NC_005345.2 + 11337 0.68 0.39819
Target:  5'- aGCGCCGCgagcAGUGAGcggcaccgccaacGGCAGcaGCCccggUCGCg -3'
miRNA:   3'- cCGCGGCG----UCACUU-------------UCGUC--CGG----AGCG- -5'
26326 3' -57.8 NC_005345.2 + 10843 0.67 0.446223
Target:  5'- cGGCGCCgagcuGCGGUG--GGCGGacuGCCgcaCGCg -3'
miRNA:   3'- -CCGCGG-----CGUCACuuUCGUC---CGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 10296 0.7 0.320396
Target:  5'- cGGCGCgGgCuGUGGGAGC-GGCCcggcacgagcguguUCGCg -3'
miRNA:   3'- -CCGCGgC-GuCACUUUCGuCCGG--------------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 9979 0.68 0.399099
Target:  5'- uGGgGuCCGCcucgaccacGUGAAAGCgaAGaGCCUCGCc -3'
miRNA:   3'- -CCgC-GGCGu--------CACUUUCG--UC-CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 9964 0.7 0.330666
Target:  5'- cGCG-CGCGGUGAGcucguGUAGGCgUCGUc -3'
miRNA:   3'- cCGCgGCGUCACUUu----CGUCCGgAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.