miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 1675 0.68 0.426996
Target:  5'- cGGCGUCGUAcGgccgGAaguuGAGCGGGUCgagaggCGCg -3'
miRNA:   3'- -CCGCGGCGU-Ca---CU----UUCGUCCGGa-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 10296 0.7 0.320396
Target:  5'- cGGCGCgGgCuGUGGGAGC-GGCCcggcacgagcguguUCGCg -3'
miRNA:   3'- -CCGCGgC-GuCACUUUCGuCCGG--------------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 16366 0.77 0.102789
Target:  5'- cGGCGCCGCGGUGAucGCGacgaucGGgUUCGUc -3'
miRNA:   3'- -CCGCGGCGUCACUuuCGU------CCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 34758 0.68 0.417568
Target:  5'- cGGCgGCgGCGGUGAc-GCGcGGCUaCGCg -3'
miRNA:   3'- -CCG-CGgCGUCACUuuCGU-CCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 23355 0.78 0.08924
Target:  5'- cGUGCUGCGcUGGGAGCGGGCCgaggCGCc -3'
miRNA:   3'- cCGCGGCGUcACUUUCGUCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 9044 0.66 0.538095
Target:  5'- cGGCGaCCGCcGgcucguGCAGGUC-CGCg -3'
miRNA:   3'- -CCGC-GGCGuCacuuu-CGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 23661 0.73 0.193439
Target:  5'- cGGCGCCGacCAG-GGucgcggccggucGGGCGGGCCgagCGCa -3'
miRNA:   3'- -CCGCGGC--GUCaCU------------UUCGUCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 18452 0.66 0.52752
Target:  5'- uGCGCCcGUGGUGGAc-CGGGUCcCGCg -3'
miRNA:   3'- cCGCGG-CGUCACUUucGUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 14820 0.66 0.517024
Target:  5'- gGGCGCgGguGUGGucgacgcccGAGCAGcuuGCCggGCu -3'
miRNA:   3'- -CCGCGgCguCACU---------UUCGUC---CGGagCG- -5'
26326 3' -57.8 NC_005345.2 + 46388 0.67 0.480991
Target:  5'- aGGcCGCCGCGcGUGGcgcgcuccacauGCGGGCCgcugucaUCGCc -3'
miRNA:   3'- -CC-GCGGCGU-CACUuu----------CGUCCGG-------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 5253 0.67 0.465924
Target:  5'- cGCGCCGCcGUGGcgaugcAGCGGGacgCGCu -3'
miRNA:   3'- cCGCGGCGuCACUu-----UCGUCCggaGCG- -5'
26326 3' -57.8 NC_005345.2 + 10843 0.67 0.446223
Target:  5'- cGGCGCCgagcuGCGGUG--GGCGGacuGCCgcaCGCg -3'
miRNA:   3'- -CCGCGG-----CGUCACuuUCGUC---CGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 48005 0.68 0.435588
Target:  5'- cGCGgCGCGGUGGugucccaggcuccGGGgAGGCUaCGCg -3'
miRNA:   3'- cCGCgGCGUCACU-------------UUCgUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 8507 0.68 0.399099
Target:  5'- cGGCGUCcacugGCAGUGGAcgGGCc-GCCUCGa -3'
miRNA:   3'- -CCGCGG-----CGUCACUU--UCGucCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 11337 0.68 0.39819
Target:  5'- aGCGCCGCgagcAGUGAGcggcaccgccaacGGCAGcaGCCccggUCGCg -3'
miRNA:   3'- cCGCGGCG----UCACUU-------------UCGUC--CGG----AGCG- -5'
26326 3' -57.8 NC_005345.2 + 9708 0.69 0.346936
Target:  5'- gGGcCGCCGC-GUGAGccgcgccgcGCGGGCCgcgacCGCg -3'
miRNA:   3'- -CC-GCGGCGuCACUUu--------CGUCCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 46687 0.7 0.330666
Target:  5'- cGCG-CGCAG-GAcuGGGCAGGCCUacaccgggaCGCg -3'
miRNA:   3'- cCGCgGCGUCaCU--UUCGUCCGGA---------GCG- -5'
26326 3' -57.8 NC_005345.2 + 30708 0.7 0.299835
Target:  5'- gGGUgGCCGCGGUGAucGGCgAGGaCCUgcugcCGCa -3'
miRNA:   3'- -CCG-CGGCGUCACUu-UCG-UCC-GGA-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 18217 0.71 0.278204
Target:  5'- gGGCGCCGC-GUucGGGUAcGGgCUCGCc -3'
miRNA:   3'- -CCGCGGCGuCAcuUUCGU-CCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 11691 0.72 0.244312
Target:  5'- cGCGCUGCAGgcGGAucgacggccgaccAGCGGGCCgccgcCGCg -3'
miRNA:   3'- cCGCGGCGUCa-CUU-------------UCGUCCGGa----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.