miRNA display CGI


Results 81 - 100 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 36126 0.73 0.197079
Target:  5'- cGGuCGCCGCAGUG--GGCAcaccgccaccgugcGGCCggcagCGCg -3'
miRNA:   3'- -CC-GCGGCGUCACuuUCGU--------------CCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 28249 0.73 0.198657
Target:  5'- gGGCGCUgucaaucgggGCAGUGAGugcgcuuuGCGGG-CUCGCg -3'
miRNA:   3'- -CCGCGG----------CGUCACUUu-------CGUCCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 42925 0.73 0.215051
Target:  5'- gGGCGUCGUGGUGcagguaucgGGAGguGGCCagggCGCc -3'
miRNA:   3'- -CCGCGGCGUCAC---------UUUCguCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 37351 0.71 0.263814
Target:  5'- -aCGCCGCGGcGugcccGAGCAgcuuugcGGCCUCGCu -3'
miRNA:   3'- ccGCGGCGUCaCu----UUCGU-------CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 35009 0.71 0.292483
Target:  5'- gGGCGCUGCGgcggccacGUGggGGCGGGaCCg-GUg -3'
miRNA:   3'- -CCGCGGCGU--------CACuuUCGUCC-GGagCG- -5'
26326 3' -57.8 NC_005345.2 + 15826 0.71 0.292483
Target:  5'- cGCGaCCGC-GUGGAGaugggcGCGGGCCcgcUCGCg -3'
miRNA:   3'- cCGC-GGCGuCACUUU------CGUCCGG---AGCG- -5'
26326 3' -57.8 NC_005345.2 + 8587 0.7 0.299835
Target:  5'- gGGCGUCaCAGUGA--GCAGGUCggGCa -3'
miRNA:   3'- -CCGCGGcGUCACUuuCGUCCGGagCG- -5'
26326 3' -57.8 NC_005345.2 + 3427 0.7 0.299835
Target:  5'- gGGCGCgGCGGcGGGcggcgauGCGGGCCccgagcUCGCg -3'
miRNA:   3'- -CCGCGgCGUCaCUUu------CGUCCGG------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 34504 0.75 0.151671
Target:  5'- cGGUGCCgaggacGCGGUcGAGGCGggccgcGGCCUCGCg -3'
miRNA:   3'- -CCGCGG------CGUCAcUUUCGU------CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 27716 0.76 0.132168
Target:  5'- uGGUGuCCGCAGacgcGGCcGGCCUCGCg -3'
miRNA:   3'- -CCGC-GGCGUCacuuUCGuCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 5335 0.68 0.426996
Target:  5'- aGCGCUGCAGU----GCGGuGCCgugggCGCg -3'
miRNA:   3'- cCGCGGCGUCAcuuuCGUC-CGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 2217 0.68 0.426996
Target:  5'- uGUGCCGUGGUGAuguGGaCAGGgagaUCUUGCg -3'
miRNA:   3'- cCGCGGCGUCACUu--UC-GUCC----GGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 37830 0.68 0.417568
Target:  5'- cGGCGCuCGCcucac-GGCGGGCCUUGa -3'
miRNA:   3'- -CCGCG-GCGucacuuUCGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 20166 0.68 0.408268
Target:  5'- aGGCGgaagcgguucacCUGCAGgucgcGCAGcGCCUCGCg -3'
miRNA:   3'- -CCGC------------GGCGUCacuuuCGUC-CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 14313 0.68 0.408268
Target:  5'- aGCGCCGCgaucccGGUGAugauCAGGCCgaugggguUCGCc -3'
miRNA:   3'- cCGCGGCG------UCACUuuc-GUCCGG--------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 18794 0.68 0.407346
Target:  5'- gGGCuGCCGUcgggcagGGUGAcggcggcGCGGGCCUgGUa -3'
miRNA:   3'- -CCG-CGGCG-------UCACUuu-----CGUCCGGAgCG- -5'
26326 3' -57.8 NC_005345.2 + 27191 0.68 0.399099
Target:  5'- cGGCGCgGgCcGUGAucggcAGCGGGUCggCGCa -3'
miRNA:   3'- -CCGCGgC-GuCACUu----UCGUCCGGa-GCG- -5'
26326 3' -57.8 NC_005345.2 + 32241 0.73 0.220768
Target:  5'- --aGCCGCAGcGgcAGCAGuGCCUCGa -3'
miRNA:   3'- ccgCGGCGUCaCuuUCGUC-CGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 2125 1.13 0.000251
Target:  5'- cGGCGCCGCAGUGAAAGCAGGCCUCGCc -3'
miRNA:   3'- -CCGCGGCGUCACUUUCGUCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 31460 0.78 0.094177
Target:  5'- aGGCGCCGgGGUGcggguguGAGGCGGGCgagCGCg -3'
miRNA:   3'- -CCGCGGCgUCAC-------UUUCGUCCGga-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.