miRNA display CGI


Results 101 - 120 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 36126 0.73 0.197079
Target:  5'- cGGuCGCCGCAGUG--GGCAcaccgccaccgugcGGCCggcagCGCg -3'
miRNA:   3'- -CC-GCGGCGUCACuuUCGU--------------CCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 22328 0.75 0.160181
Target:  5'- gGGUGCCggcaGCAGUGAugcggcGAGCAGcGCCUgcgaCGCg -3'
miRNA:   3'- -CCGCGG----CGUCACU------UUCGUC-CGGA----GCG- -5'
26326 3' -57.8 NC_005345.2 + 17269 0.75 0.155874
Target:  5'- aGGCGCCGCGGUccuGGucugcgcGCGGGUCUUGUc -3'
miRNA:   3'- -CCGCGGCGUCA---CUuu-----CGUCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 34504 0.75 0.151671
Target:  5'- cGGUGCCgaggacGCGGUcGAGGCGggccgcGGCCUCGCg -3'
miRNA:   3'- -CCGCGG------CGUCAcUUUCGU------CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 27716 0.76 0.132168
Target:  5'- uGGUGuCCGCAGacgcGGCcGGCCUCGCg -3'
miRNA:   3'- -CCGC-GGCGUCacuuUCGuCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 8587 0.7 0.299835
Target:  5'- gGGCGUCaCAGUGA--GCAGGUCggGCa -3'
miRNA:   3'- -CCGCGGcGUCACUuuCGUCCGGagCG- -5'
26326 3' -57.8 NC_005345.2 + 3427 0.7 0.299835
Target:  5'- gGGCGCgGCGGcGGGcggcgauGCGGGCCccgagcUCGCg -3'
miRNA:   3'- -CCGCGgCGUCaCUUu------CGUCCGG------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 28972 0.7 0.314966
Target:  5'- aGGCcccGCCGCAucgGAAugcGGCGGGgCUCGUg -3'
miRNA:   3'- -CCG---CGGCGUca-CUU---UCGUCCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 31193 0.69 0.390063
Target:  5'- gGGCGCgGCGGgugcGGCGGGUg-CGCa -3'
miRNA:   3'- -CCGCGgCGUCacuuUCGUCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 24637 0.69 0.382045
Target:  5'- gGGCGCCucGCGGUGGucgaccaggaucccGCGGGCC-CGg -3'
miRNA:   3'- -CCGCGG--CGUCACUuu------------CGUCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 36330 0.69 0.36377
Target:  5'- uGCGgCGCAGgcGAAccGGCGGGCCgaGCg -3'
miRNA:   3'- cCGCgGCGUCa-CUU--UCGUCCGGagCG- -5'
26326 3' -57.8 NC_005345.2 + 48671 0.69 0.355283
Target:  5'- cGGCGCacauggaucccUGCAaucaaGGcuGCAGGCCUCGCc -3'
miRNA:   3'- -CCGCG-----------GCGUca---CUuuCGUCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 5891 0.69 0.346936
Target:  5'- uGGCGUCGUccuccuggucGGUGAugaauGCGGGCCacgacagcgggUCGCc -3'
miRNA:   3'- -CCGCGGCG----------UCACUuu---CGUCCGG-----------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 39778 0.69 0.346936
Target:  5'- cGGCuGcCCGUAGUGGucGAGCccGGCCgccCGCa -3'
miRNA:   3'- -CCG-C-GGCGUCACU--UUCGu-CCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 2750 0.69 0.346109
Target:  5'- cGGC-CCGCAuGUGGAgcgcgccacgcgcGGC-GGCCUCGg -3'
miRNA:   3'- -CCGcGGCGU-CACUU-------------UCGuCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 33126 0.7 0.339544
Target:  5'- -uCGCCGCGGgucucacccucGCGGGCCUCGg -3'
miRNA:   3'- ccGCGGCGUCacuuu------CGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 45977 0.7 0.337106
Target:  5'- cGCGCCucgcuuucucucuGguGUGguGGCGGGCCcucggggUCGCu -3'
miRNA:   3'- cCGCGG-------------CguCACuuUCGUCCGG-------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 9964 0.7 0.330666
Target:  5'- cGCG-CGCGGUGAGcucguGUAGGCgUCGUc -3'
miRNA:   3'- cCGCgGCGUCACUUu----CGUCCGgAGCG- -5'
26326 3' -57.8 NC_005345.2 + 27997 0.7 0.322745
Target:  5'- gGGCGUCGCGuagggcGUcGAGGaugcggagcgcGCAGGCCUCGa -3'
miRNA:   3'- -CCGCGGCGU------CA-CUUU-----------CGUCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 44874 0.7 0.314966
Target:  5'- cGGCgGCCGCGucGcGAGgcgcAGCAacguGGCCUCGCc -3'
miRNA:   3'- -CCG-CGGCGU--CaCUU----UCGU----CCGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.