miRNA display CGI


Results 21 - 40 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 35211 0.66 0.52752
Target:  5'- gGGCGCUaucugGCuGUGGAAGUcGGCgCUCa- -3'
miRNA:   3'- -CCGCGG-----CGuCACUUUCGuCCG-GAGcg -5'
26326 3' -57.8 NC_005345.2 + 40265 0.66 0.52752
Target:  5'- gGGCGCCgGCGGgcaugaguccgGAGAGCGucauGCCgCGCc -3'
miRNA:   3'- -CCGCGG-CGUCa----------CUUUCGUc---CGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 45558 0.66 0.517024
Target:  5'- aGCgGCCGaGGUcGGGGCGGGCCggUUGCg -3'
miRNA:   3'- cCG-CGGCgUCAcUUUCGUCCGG--AGCG- -5'
26326 3' -57.8 NC_005345.2 + 14820 0.66 0.517024
Target:  5'- gGGCGCgGguGUGGucgacgcccGAGCAGcuuGCCggGCu -3'
miRNA:   3'- -CCGCGgCguCACU---------UUCGUC---CGGagCG- -5'
26326 3' -57.8 NC_005345.2 + 47906 0.66 0.517024
Target:  5'- cGUGCCGCAGcccgccgGAAAGCcauGGGaCC-CGUa -3'
miRNA:   3'- cCGCGGCGUCa------CUUUCG---UCC-GGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 7123 0.66 0.517024
Target:  5'- uGGCGCCGCGc-GAAccgGGCGGGgCaCGUg -3'
miRNA:   3'- -CCGCGGCGUcaCUU---UCGUCCgGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 15080 0.66 0.517024
Target:  5'- aGCGCCuGC-GUGAu--CAGGCCUacCGCc -3'
miRNA:   3'- cCGCGG-CGuCACUuucGUCCGGA--GCG- -5'
26326 3' -57.8 NC_005345.2 + 27920 0.66 0.506612
Target:  5'- cGGUGUCGCuuccGAgcGCGGuGCCUCGa -3'
miRNA:   3'- -CCGCGGCGuca-CUuuCGUC-CGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 43698 0.66 0.506612
Target:  5'- -uCGCCGC-GUG--GGCcGGCCUCGa -3'
miRNA:   3'- ccGCGGCGuCACuuUCGuCCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 14960 0.67 0.496291
Target:  5'- cGCGCCGCGGcUGAucagucGGUcgGGGCCcCGg -3'
miRNA:   3'- cCGCGGCGUC-ACUu-----UCG--UCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 18287 0.67 0.496291
Target:  5'- uGCGUCGCGcUGGucGguGuCCUCGCg -3'
miRNA:   3'- cCGCGGCGUcACUuuCguCcGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 31311 0.67 0.496291
Target:  5'- gGGCGCugcugCGCGGUcugGAGGGC-GGCCggaCGUg -3'
miRNA:   3'- -CCGCG-----GCGUCA---CUUUCGuCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 22033 0.67 0.486066
Target:  5'- cGGUGCCGCcGUGGcgccGAGCAugucGGCCa--- -3'
miRNA:   3'- -CCGCGGCGuCACU----UUCGU----CCGGagcg -5'
26326 3' -57.8 NC_005345.2 + 8006 0.67 0.486066
Target:  5'- cGGCgGCCGCGGUuucacGAGCucgacGGGCucgacCUCGCg -3'
miRNA:   3'- -CCG-CGGCGUCAcu---UUCG-----UCCG-----GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 46388 0.67 0.480991
Target:  5'- aGGcCGCCGCGcGUGGcgcgcuccacauGCGGGCCgcugucaUCGCc -3'
miRNA:   3'- -CC-GCGGCGU-CACUuu----------CGUCCGG-------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 33391 0.67 0.475942
Target:  5'- uGGCuacaGCCGCGGUcGAGGUcGGCgUCGg -3'
miRNA:   3'- -CCG----CGGCGUCAcUUUCGuCCGgAGCg -5'
26326 3' -57.8 NC_005345.2 + 12875 0.67 0.475942
Target:  5'- uGGCucGCCGCcgGGUGGccGCucGCCUCGa -3'
miRNA:   3'- -CCG--CGGCG--UCACUuuCGucCGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 37241 0.67 0.475942
Target:  5'- cGUGCCGUAGU---AGCGGGCgaCGg -3'
miRNA:   3'- cCGCGGCGUCAcuuUCGUCCGgaGCg -5'
26326 3' -57.8 NC_005345.2 + 48349 0.67 0.465924
Target:  5'- gGGCGa-GCAgGUGuAAGCGGGCC-CGg -3'
miRNA:   3'- -CCGCggCGU-CACuUUCGUCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 5253 0.67 0.465924
Target:  5'- cGCGCCGCcGUGGcgaugcAGCGGGacgCGCu -3'
miRNA:   3'- cCGCGGCGuCACUu-----UCGUCCggaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.