Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26327 | 3' | -60.7 | NC_005345.2 | + | 963 | 1.05 | 0.000444 |
Target: 5'- gCUCCCCGAGCAGGAACCGCGGGUCAAu -3' miRNA: 3'- -GAGGGGCUCGUCCUUGGCGCCCAGUU- -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 1742 | 0.66 | 0.388395 |
Target: 5'- -cCCCCGGGCAGGcaggcgacguuuGACCGUcGGcCAu -3' miRNA: 3'- gaGGGGCUCGUCC------------UUGGCGcCCaGUu -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 4785 | 0.66 | 0.388395 |
Target: 5'- cCUUUCCGGGCuc--GCCGCGGGUgGGg -3' miRNA: 3'- -GAGGGGCUCGuccuUGGCGCCCAgUU- -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 10302 | 0.68 | 0.292337 |
Target: 5'- --aCCCGAGCGGGAa--GCGGG-CAGa -3' miRNA: 3'- gagGGGCUCGUCCUuggCGCCCaGUU- -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 11175 | 0.66 | 0.37964 |
Target: 5'- -aCCCCGGcGCAGGu-CCGCagccuGGUCGAc -3' miRNA: 3'- gaGGGGCU-CGUCCuuGGCGc----CCAGUU- -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 16336 | 0.66 | 0.385754 |
Target: 5'- gCUUCCCGAGUGccucgcGGAacgcgccgagcaucGCCGCGGcGUCGc -3' miRNA: 3'- -GAGGGGCUCGU------CCU--------------UGGCGCC-CAGUu -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 16577 | 0.67 | 0.345968 |
Target: 5'- uCUCCuUCGAGC---GugCGCGGGUCAAc -3' miRNA: 3'- -GAGG-GGCUCGuccUugGCGCCCAGUU- -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 18561 | 0.69 | 0.243563 |
Target: 5'- gCUCgCCGGGUgcgcgcccagcgucGGGAacACCGcCGGGUCGAa -3' miRNA: 3'- -GAGgGGCUCG--------------UCCU--UGGC-GCCCAGUU- -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 18951 | 0.67 | 0.345968 |
Target: 5'- gUCgCCCG-GCAGGGuccgaagcgcucGCCGCauGGGUCGc -3' miRNA: 3'- gAG-GGGCuCGUCCU------------UGGCG--CCCAGUu -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 21683 | 0.69 | 0.23926 |
Target: 5'- gUUCCCGGGCAGGGGCU-CGGGcuugCAGu -3' miRNA: 3'- gAGGGGCUCGUCCUUGGcGCCCa---GUU- -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 23577 | 0.67 | 0.337891 |
Target: 5'- --gUCCGAGCuGcGGCUGCGGGUCGc -3' miRNA: 3'- gagGGGCUCGuCcUUGGCGCCCAGUu -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 23730 | 0.67 | 0.329953 |
Target: 5'- gCUUCCUG-GCGGGAAgaGCGGG-CAGa -3' miRNA: 3'- -GAGGGGCuCGUCCUUggCGCCCaGUU- -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 26767 | 0.68 | 0.299583 |
Target: 5'- gUCCCCGGcGCGGGuGCgGCGGaUCGu -3' miRNA: 3'- gAGGGGCU-CGUCCuUGgCGCCcAGUu -5' |
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26327 | 3' | -60.7 | NC_005345.2 | + | 35304 | 0.69 | 0.245427 |
Target: 5'- gUCCgCGAGCguGGGGACC-CGGGUUg- -3' miRNA: 3'- gAGGgGCUCG--UCCUUGGcGCCCAGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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