Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26327 | 5' | -54.7 | NC_005345.2 | + | 1006 | 1.09 | 0.001056 |
Target: 5'- gUGUCGUCCGGUGGAUCGAGCUCGAAGa -3' miRNA: 3'- -ACAGCAGGCCACCUAGCUCGAGCUUC- -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 6873 | 0.68 | 0.638552 |
Target: 5'- aGUCG-CCGaugccgcugcgcauGUGGAUCGAGCagCGAc- -3' miRNA: 3'- aCAGCaGGC--------------CACCUAGCUCGa-GCUuc -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 7989 | 0.67 | 0.690236 |
Target: 5'- aGUCGaUCCGGUucaaccggcggccgcGGuuucaCGAGCUCGAc- -3' miRNA: 3'- aCAGC-AGGCCA---------------CCua---GCUCGAGCUuc -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 8563 | 0.66 | 0.707604 |
Target: 5'- cGUcCGUCgCGG-GGAUUGAgccGCUCGAc- -3' miRNA: 3'- aCA-GCAG-GCCaCCUAGCU---CGAGCUuc -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 17349 | 0.66 | 0.72904 |
Target: 5'- cGUCGUCgagguCGGcGGAcuggUCGGGCUCGu-- -3' miRNA: 3'- aCAGCAG-----GCCaCCU----AGCUCGAGCuuc -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 24784 | 0.68 | 0.646284 |
Target: 5'- cGUCGUCCgaccucggcaagguGGUgcagccgggcgaccGGAUCGuGCUCGGGu -3' miRNA: 3'- aCAGCAGG--------------CCA--------------CCUAGCuCGAGCUUc -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 26413 | 0.68 | 0.608731 |
Target: 5'- cGUCGUCCucgcGGAUCGuccacGGCUCGAc- -3' miRNA: 3'- aCAGCAGGcca-CCUAGC-----UCGAGCUuc -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 29468 | 0.66 | 0.739618 |
Target: 5'- cGUCGgcCCGGUccaacucGUCGAGCUCGucGg -3' miRNA: 3'- aCAGCa-GGCCAcc-----UAGCUCGAGCuuC- -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 35423 | 0.68 | 0.608731 |
Target: 5'- cGUCGUCCGGU---UCG-GCgUCGggGu -3' miRNA: 3'- aCAGCAGGCCAccuAGCuCG-AGCuuC- -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 35911 | 0.69 | 0.543243 |
Target: 5'- -aUCGUCgGGUGGcUCGGGaCgcggCGAAGa -3' miRNA: 3'- acAGCAGgCCACCuAGCUC-Ga---GCUUC- -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 42583 | 0.66 | 0.718365 |
Target: 5'- gGUCG-CCGGgcggcaGGAUCGAguacaGCUCGcGAGc -3' miRNA: 3'- aCAGCaGGCCa-----CCUAGCU-----CGAGC-UUC- -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 43135 | 0.7 | 0.511334 |
Target: 5'- cGUCGUacaCGGUGGuGUCGGGCUUc--- -3' miRNA: 3'- aCAGCAg--GCCACC-UAGCUCGAGcuuc -5' |
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26327 | 5' | -54.7 | NC_005345.2 | + | 48362 | 0.68 | 0.638552 |
Target: 5'- gGUC-UCCGGUGGggCGAggcgacggcgcugcGCUgGGAGa -3' miRNA: 3'- aCAGcAGGCCACCuaGCU--------------CGAgCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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