miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 3' -61.9 NC_005345.2 + 34672 0.66 0.394228
Target:  5'- aGUCGGCGUagucgaggGCGUCgGgGAUGCCg -3'
miRNA:   3'- gUAGCCGCGgg------CGUAGgCgCUGCGGg -5'
26328 3' -61.9 NC_005345.2 + 35010 0.66 0.394228
Target:  5'- gGUCGGCGa-CGCugCCGUGugGCUg -3'
miRNA:   3'- gUAGCCGCggGCGuaGGCGCugCGGg -5'
26328 3' -61.9 NC_005345.2 + 18947 0.66 0.394228
Target:  5'- gAUCGuCGCCCgGCAgggUCCGaaGCGCUCg -3'
miRNA:   3'- gUAGCcGCGGG-CGU---AGGCgcUGCGGG- -5'
26328 3' -61.9 NC_005345.2 + 14381 0.66 0.394228
Target:  5'- -cUCGGCGaCCgGCcggugccgAUCCGgcugcacgucgcCGACGCCUg -3'
miRNA:   3'- guAGCCGC-GGgCG--------UAGGC------------GCUGCGGG- -5'
26328 3' -61.9 NC_005345.2 + 12709 0.66 0.394228
Target:  5'- gGUgGGCgaugcaGCCCGUGUUCGCcgucgaGAuCGCCCa -3'
miRNA:   3'- gUAgCCG------CGGGCGUAGGCG------CU-GCGGG- -5'
26328 3' -61.9 NC_005345.2 + 3823 0.66 0.394228
Target:  5'- --aCGGuCGUCCGCugcgagGUCgGCGGCGUgCg -3'
miRNA:   3'- guaGCC-GCGGGCG------UAGgCGCUGCGgG- -5'
26328 3' -61.9 NC_005345.2 + 38835 0.66 0.394228
Target:  5'- aCAUCGGUgauccgcucuGCCCGCuucccgcucggGUCCGgUGuCGCCg -3'
miRNA:   3'- -GUAGCCG----------CGGGCG-----------UAGGC-GCuGCGGg -5'
26328 3' -61.9 NC_005345.2 + 22767 0.66 0.389033
Target:  5'- gCGUCGaGCuGCCCGaa-CUGCGuguucucacccuccgACGCCCa -3'
miRNA:   3'- -GUAGC-CG-CGGGCguaGGCGC---------------UGCGGG- -5'
26328 3' -61.9 NC_005345.2 + 39735 0.66 0.385595
Target:  5'- cCGUCGGCGagacCCCGCugccaCGCGcCGUCg -3'
miRNA:   3'- -GUAGCCGC----GGGCGuag--GCGCuGCGGg -5'
26328 3' -61.9 NC_005345.2 + 14349 0.66 0.385595
Target:  5'- --aCGGCGUgCGCGaggaCCGCGAC-CCg -3'
miRNA:   3'- guaGCCGCGgGCGUa---GGCGCUGcGGg -5'
26328 3' -61.9 NC_005345.2 + 46534 0.66 0.385595
Target:  5'- -uUCGGC-CCCGacucCGUCCGCG-CGCa- -3'
miRNA:   3'- guAGCCGcGGGC----GUAGGCGCuGCGgg -5'
26328 3' -61.9 NC_005345.2 + 4324 0.66 0.385595
Target:  5'- cCGUCGauGCGCCC-CAcCCGCGA-GCaCCu -3'
miRNA:   3'- -GUAGC--CGCGGGcGUaGGCGCUgCG-GG- -5'
26328 3' -61.9 NC_005345.2 + 15433 0.66 0.385595
Target:  5'- -cUUGGCGUacaccUCGC--CCGCGACgGCCCc -3'
miRNA:   3'- guAGCCGCG-----GGCGuaGGCGCUG-CGGG- -5'
26328 3' -61.9 NC_005345.2 + 30155 0.66 0.385595
Target:  5'- cCGUCgaGGuCGuCCCGCcggCCaGCGGCGaCCCa -3'
miRNA:   3'- -GUAG--CC-GC-GGGCGua-GG-CGCUGC-GGG- -5'
26328 3' -61.9 NC_005345.2 + 30392 0.66 0.385595
Target:  5'- gGUCgaGGCGUaccucgacgaCGCGUCCGCGcucauggcGCGCCa -3'
miRNA:   3'- gUAG--CCGCGg---------GCGUAGGCGC--------UGCGGg -5'
26328 3' -61.9 NC_005345.2 + 47928 0.66 0.385595
Target:  5'- cCAUgGGa-CCCGUAccgcgCgGCGugGCCCg -3'
miRNA:   3'- -GUAgCCgcGGGCGUa----GgCGCugCGGG- -5'
26328 3' -61.9 NC_005345.2 + 10817 0.66 0.377087
Target:  5'- gAUUGGUGCCUGCGgcagacaCGagcCGGCGCCg -3'
miRNA:   3'- gUAGCCGCGGGCGUag-----GC---GCUGCGGg -5'
26328 3' -61.9 NC_005345.2 + 18616 0.66 0.377087
Target:  5'- -cUCGGCauacuGCCCGauCGUCCGCugccgguaccCGCCCg -3'
miRNA:   3'- guAGCCG-----CGGGC--GUAGGCGcu--------GCGGG- -5'
26328 3' -61.9 NC_005345.2 + 39003 0.66 0.377087
Target:  5'- ---gGGCGCuCCGCAga-GCGGcCGCCg -3'
miRNA:   3'- guagCCGCG-GGCGUaggCGCU-GCGGg -5'
26328 3' -61.9 NC_005345.2 + 21124 0.66 0.377087
Target:  5'- --aCGGCGgCUGCGUUCGCcuucgcACGCUCc -3'
miRNA:   3'- guaGCCGCgGGCGUAGGCGc-----UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.