miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 11342 0.66 0.808678
Target:  5'- uCCGGCC-GUUGguGC-CGAGCagcagCGUCg -3'
miRNA:   3'- -GGUUGGaCAGCguCGaGCUUGa----GCGG- -5'
26328 5' -53.7 NC_005345.2 + 39361 0.66 0.808678
Target:  5'- aCAGCggcgaacacgCUGUCGCAGCuacgccUCGGcggcGCaaUCGCCg -3'
miRNA:   3'- gGUUG----------GACAGCGUCG------AGCU----UG--AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 34820 0.66 0.808678
Target:  5'- gCCGugcGCCUGccccUCGCcgacguGCUCgcaGAACUCGCa -3'
miRNA:   3'- -GGU---UGGAC----AGCGu-----CGAG---CUUGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 34312 0.66 0.808678
Target:  5'- gCAGCCcGgcaaGCuGCUCGGGCgUCGaCCa -3'
miRNA:   3'- gGUUGGaCag--CGuCGAGCUUG-AGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 27222 0.66 0.808678
Target:  5'- gCAGCgc-UCGCAGgUgGGugUCGCCa -3'
miRNA:   3'- gGUUGgacAGCGUCgAgCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 28284 0.66 0.808678
Target:  5'- -aAGCUcGUCGacaAGCUCGcGCcCGCCa -3'
miRNA:   3'- ggUUGGaCAGCg--UCGAGCuUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 25361 0.66 0.799034
Target:  5'- gCCGuCCUGgCGUggcagugccGGCUCGAcgcgaUCGCCg -3'
miRNA:   3'- -GGUuGGACaGCG---------UCGAGCUug---AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 40195 0.66 0.799034
Target:  5'- -aGGCCggcgUGCAGCUCGGcaGCUaCGUCg -3'
miRNA:   3'- ggUUGGaca-GCGUCGAGCU--UGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 24817 0.66 0.799034
Target:  5'- gCGACCgGaUCGUgcucgGGUUCGAcgGCUCGCg -3'
miRNA:   3'- gGUUGGaC-AGCG-----UCGAGCU--UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 12923 0.66 0.799033
Target:  5'- aCAACCggcaGCAgGCUCGcgGACUgGCCc -3'
miRNA:   3'- gGUUGGacagCGU-CGAGC--UUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 38547 0.66 0.799033
Target:  5'- aCCGGCCgcGcCGCuGCUCGugccaccGCUCGUa -3'
miRNA:   3'- -GGUUGGa-CaGCGuCGAGCu------UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 44982 0.66 0.799033
Target:  5'- cCCGugagcGCCUGcCGCGucgacacccGCUCG-ACgagCGCCg -3'
miRNA:   3'- -GGU-----UGGACaGCGU---------CGAGCuUGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 26991 0.66 0.799033
Target:  5'- gCCGGCgCUgcucgccacagcGUCGCGGUagcgcgaccacgUCGAcgagucugugcuGCUCGCCa -3'
miRNA:   3'- -GGUUG-GA------------CAGCGUCG------------AGCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 7617 0.66 0.789212
Target:  5'- gUCGACCagGUCGCcgagacGCUCGcGCUcCGCg -3'
miRNA:   3'- -GGUUGGa-CAGCGu-----CGAGCuUGA-GCGg -5'
26328 5' -53.7 NC_005345.2 + 24756 0.66 0.789212
Target:  5'- gCguGgCUGUCGCAGCcCGAaguGCgggCGUCg -3'
miRNA:   3'- -GguUgGACAGCGUCGaGCU---UGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 8122 0.66 0.789212
Target:  5'- cCCGGCCgccgucGUCGaCGGCUCuuGGccGCUgCGCCc -3'
miRNA:   3'- -GGUUGGa-----CAGC-GUCGAG--CU--UGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 42545 0.66 0.789212
Target:  5'- aCCGccGCCgGUCcaCAGCUCG--UUCGCCu -3'
miRNA:   3'- -GGU--UGGaCAGc-GUCGAGCuuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 18775 0.66 0.789212
Target:  5'- cUCGACCUG-CGCccGCcgCGGGCU-GCCg -3'
miRNA:   3'- -GGUUGGACaGCGu-CGa-GCUUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 38307 0.66 0.789212
Target:  5'- uCCGcCCac-CGCAGCUCGGcgccgGCUCGUg -3'
miRNA:   3'- -GGUuGGacaGCGUCGAGCU-----UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 29479 0.66 0.789212
Target:  5'- uCCAACUcGUCG-AGCUCGucggCGCUg -3'
miRNA:   3'- -GGUUGGaCAGCgUCGAGCuugaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.