miRNA display CGI


Results 81 - 100 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 42350 0.68 0.680447
Target:  5'- gUCAACCgaugauucgcuuccCGCAGCUCGAcaccgacgGCaUCGCCu -3'
miRNA:   3'- -GGUUGGaca-----------GCGUCGAGCU--------UG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 12983 0.68 0.683746
Target:  5'- aCCAGCUgaacaCGCAGUUCGcGCU-GCCg -3'
miRNA:   3'- -GGUUGGaca--GCGUCGAGCuUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 18532 0.68 0.683746
Target:  5'- gCCAugugcACCgGUgGgCuGCUCGGggcGCUCGCCg -3'
miRNA:   3'- -GGU-----UGGaCAgC-GuCGAGCU---UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 11372 0.68 0.650598
Target:  5'- gCAGCCccgGUCGCGGCcgccugcgggCGAgcaGCUCGaCCu -3'
miRNA:   3'- gGUUGGa--CAGCGUCGa---------GCU---UGAGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 37739 0.68 0.650598
Target:  5'- gCCGGCUggucggcGUCGUcgAGgUCGAgcuGCUCGCCc -3'
miRNA:   3'- -GGUUGGa------CAGCG--UCgAGCU---UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 44176 0.68 0.69471
Target:  5'- cCCAcCCgagGUCGCAGUgCGAGCaCGUg -3'
miRNA:   3'- -GGUuGGa--CAGCGUCGaGCUUGaGCGg -5'
26328 5' -53.7 NC_005345.2 + 43973 0.69 0.595138
Target:  5'- gCAGCCcg--GCGGCUCGcccGACUCGUCg -3'
miRNA:   3'- gGUUGGacagCGUCGAGC---UUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 43546 0.69 0.606204
Target:  5'- gCCGAgCUcGUCGCcgacaAGCUCGccgaccgcCUCGCCa -3'
miRNA:   3'- -GGUUgGA-CAGCG-----UCGAGCuu------GAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 31574 0.69 0.615073
Target:  5'- aCGACCUGaUGCAGCUCugccgggcccuGCUCGgCg -3'
miRNA:   3'- gGUUGGACaGCGUCGAGcu---------UGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 34829 0.69 0.616183
Target:  5'- aUCGGCCUGaucaucaccgggaUCGCGgcGCUCGugacccuGCUCGUCg -3'
miRNA:   3'- -GGUUGGAC-------------AGCGU--CGAGCu------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 36798 0.69 0.639499
Target:  5'- aCAGCCgcagCGCAGCUgaCGAAg-CGCCu -3'
miRNA:   3'- gGUUGGaca-GCGUCGA--GCUUgaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 22544 0.69 0.628394
Target:  5'- aCCGGCCUGcgcCGCAGCgagcgCGAGCaccgauucgaGCCc -3'
miRNA:   3'- -GGUUGGACa--GCGUCGa----GCUUGag--------CGG- -5'
26328 5' -53.7 NC_005345.2 + 40386 0.69 0.632837
Target:  5'- cUCAuCCUG-CGCAGCcucccCGAugcugcagucgucgcGCUCGCCa -3'
miRNA:   3'- -GGUuGGACaGCGUCGa----GCU---------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29734 0.69 0.628394
Target:  5'- aCCGACgCgg-CGCAGCcgacCGAGCUCGgCg -3'
miRNA:   3'- -GGUUG-GacaGCGUCGa---GCUUGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 41887 0.69 0.617292
Target:  5'- uCCGGgCUGUCgaGCAGCU---GCUCGUCg -3'
miRNA:   3'- -GGUUgGACAG--CGUCGAgcuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29378 0.69 0.617292
Target:  5'- aCGGCUcggUGUCGUacGGCUCGGccGC-CGCCu -3'
miRNA:   3'- gGUUGG---ACAGCG--UCGAGCU--UGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 11153 0.69 0.628394
Target:  5'- aCC-ACgUGaUGCcaAGCUCGGcACUCGCCg -3'
miRNA:   3'- -GGuUGgACaGCG--UCGAGCU-UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 14175 0.69 0.628394
Target:  5'- aCCAugaGCCcGUCGaacccCGGCUUGAGCgUCGUCg -3'
miRNA:   3'- -GGU---UGGaCAGC-----GUCGAGCUUG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 25220 0.7 0.543698
Target:  5'- gCCGGCCgGUCaccggguGCAGCUCguagaaccgcagcagGAACUCgGCCu -3'
miRNA:   3'- -GGUUGGaCAG-------CGUCGAG---------------CUUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 5733 0.7 0.528639
Target:  5'- gCCGGCCgUGUuccgggcCGCAGCcgaGGACUgCGCCg -3'
miRNA:   3'- -GGUUGG-ACA-------GCGUCGag-CUUGA-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.