miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 26408 0.73 0.408529
Target:  5'- aCCGACCUGUCGgGGUUCcugaaaGAGCaCGCg -3'
miRNA:   3'- -GGUUGGACAGCgUCGAG------CUUGaGCGg -5'
26328 5' -53.7 NC_005345.2 + 8659 0.72 0.417972
Target:  5'- gCCGAUC-GUCGCGGCgau--CUCGCCg -3'
miRNA:   3'- -GGUUGGaCAGCGUCGagcuuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 5165 0.72 0.417972
Target:  5'- gCGACUcGUCGCcGCccUCGAagGCUCGCCc -3'
miRNA:   3'- gGUUGGaCAGCGuCG--AGCU--UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 33313 0.72 0.457031
Target:  5'- -gAACCUGcgcggUGUAGCUCGGGCcgucggccggagUCGCCg -3'
miRNA:   3'- ggUUGGACa----GCGUCGAGCUUG------------AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 18896 0.72 0.466087
Target:  5'- cCCGGCCUGcUCgGCGGCcgCGAucauguccucgcgGCUCGCg -3'
miRNA:   3'- -GGUUGGAC-AG-CGUCGa-GCU-------------UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 29273 0.71 0.477281
Target:  5'- gCAACaucgGcgCGCGGUUCGAGgUCGCCc -3'
miRNA:   3'- gGUUGga--Ca-GCGUCGAGCUUgAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 2471 0.71 0.477281
Target:  5'- cCCAGuCCUGcgCGCgagcgAGCUCGAugUacaCGCCg -3'
miRNA:   3'- -GGUU-GGACa-GCG-----UCGAGCUugA---GCGG- -5'
26328 5' -53.7 NC_005345.2 + 44112 0.71 0.487571
Target:  5'- gCAGCCUgcgccacugGUCGUGGCUguggaucguaugCGGGCUCGUCa -3'
miRNA:   3'- gGUUGGA---------CAGCGUCGA------------GCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 16291 0.71 0.497965
Target:  5'- gCAGCUUGUacUGCGGCagcccgaucgccUCGAACUCgGCCc -3'
miRNA:   3'- gGUUGGACA--GCGUCG------------AGCUUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 22452 0.71 0.508456
Target:  5'- uUCAGCUUGgUCGCGGCgUCGGccuuuAC-CGCCa -3'
miRNA:   3'- -GGUUGGAC-AGCGUCG-AGCU-----UGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 36252 0.71 0.508456
Target:  5'- gCGGCC-GUCGCGGCgaucgaggCGAGCg-GCCa -3'
miRNA:   3'- gGUUGGaCAGCGUCGa-------GCUUGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 32529 0.71 0.51904
Target:  5'- cCCGAUCUG-CGCGGgUCcGGGC-CGCCc -3'
miRNA:   3'- -GGUUGGACaGCGUCgAG-CUUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 4970 0.71 0.51904
Target:  5'- uCCuGCggUGUCGCGGC-CGAucggacgaacgcGCUCGCCa -3'
miRNA:   3'- -GGuUGg-ACAGCGUCGaGCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 5733 0.7 0.528639
Target:  5'- gCCGGCCgUGUuccgggcCGCAGCcgaGGACUgCGCCg -3'
miRNA:   3'- -GGUUGG-ACA-------GCGUCGag-CUUGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 45167 0.7 0.52971
Target:  5'- uCCGACCgggccucgacGUCGCAGC-CGAGuaUGCCg -3'
miRNA:   3'- -GGUUGGa---------CAGCGUCGaGCUUgaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 14432 0.7 0.52971
Target:  5'- gCGAUCgagGUCGCGcucuGCUC--GCUCGCCg -3'
miRNA:   3'- gGUUGGa--CAGCGU----CGAGcuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 37073 0.7 0.540459
Target:  5'- gUCGAUCUGUCGCuGUcggCGAGCgaugaacucggCGCCg -3'
miRNA:   3'- -GGUUGGACAGCGuCGa--GCUUGa----------GCGG- -5'
26328 5' -53.7 NC_005345.2 + 25220 0.7 0.543698
Target:  5'- gCCGGCCgGUCaccggguGCAGCUCguagaaccgcagcagGAACUCgGCCu -3'
miRNA:   3'- -GGUUGGaCAG-------CGUCGAG---------------CUUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 34776 0.7 0.562167
Target:  5'- aCCGGCCgGUCGC----CGAGCUgCGCCg -3'
miRNA:   3'- -GGUUGGaCAGCGucgaGCUUGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 34307 0.7 0.562167
Target:  5'- -aAGCa-GUCGCAGCUCGccgUCGCCc -3'
miRNA:   3'- ggUUGgaCAGCGUCGAGCuugAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.