miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 26795 0.7 0.562167
Target:  5'- gCCGgcGCCgcGUCGCAGg-CGcuGCUCGCCg -3'
miRNA:   3'- -GGU--UGGa-CAGCGUCgaGCu-UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 34776 0.7 0.562167
Target:  5'- aCCGGCCgGUCGC----CGAGCUgCGCCg -3'
miRNA:   3'- -GGUUGGaCAGCGucgaGCUUGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 8968 0.7 0.573111
Target:  5'- cUCGACCUGUCGCuccGUcgaCGGGCgugUGCCu -3'
miRNA:   3'- -GGUUGGACAGCGu--CGa--GCUUGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 37670 0.7 0.573111
Target:  5'- gCC-GCCUG-CGCGGCccUGAugUCGUCg -3'
miRNA:   3'- -GGuUGGACaGCGUCGa-GCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 41543 0.7 0.574208
Target:  5'- gCGACCUGgucgacgacgucgugCGCGcGCUCGccguGCUCGCg -3'
miRNA:   3'- gGUUGGACa--------------GCGU-CGAGCu---UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 45699 0.7 0.584104
Target:  5'- aCAGCCcG-CGCgAGCUCGGggcccGCaUCGCCg -3'
miRNA:   3'- gGUUGGaCaGCG-UCGAGCU-----UG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8971 0.7 0.584104
Target:  5'- gCCGGCCUcGaUCGCAGCU---GCgCGCCg -3'
miRNA:   3'- -GGUUGGA-C-AGCGUCGAgcuUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 46647 0.7 0.584104
Target:  5'- gCCAGCggaacggCGCAGCggcguguacaUCGAGCUCGCUc -3'
miRNA:   3'- -GGUUGgaca---GCGUCG----------AGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 16490 0.7 0.584104
Target:  5'- aUCGuCCUGcUCGC-GCUCGAccugcuGCUCGCg -3'
miRNA:   3'- -GGUuGGAC-AGCGuCGAGCU------UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 43973 0.69 0.595138
Target:  5'- gCAGCCcg--GCGGCUCGcccGACUCGUCg -3'
miRNA:   3'- gGUUGGacagCGUCGAGC---UUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 43546 0.69 0.606204
Target:  5'- gCCGAgCUcGUCGCcgacaAGCUCGccgaccgcCUCGCCa -3'
miRNA:   3'- -GGUUgGA-CAGCG-----UCGAGCuu------GAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 31574 0.69 0.615073
Target:  5'- aCGACCUGaUGCAGCUCugccgggcccuGCUCGgCg -3'
miRNA:   3'- gGUUGGACaGCGUCGAGcu---------UGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 34829 0.69 0.616183
Target:  5'- aUCGGCCUGaucaucaccgggaUCGCGgcGCUCGugacccuGCUCGUCg -3'
miRNA:   3'- -GGUUGGAC-------------AGCGU--CGAGCu------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 41887 0.69 0.617292
Target:  5'- uCCGGgCUGUCgaGCAGCU---GCUCGUCg -3'
miRNA:   3'- -GGUUgGACAG--CGUCGAgcuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29378 0.69 0.617292
Target:  5'- aCGGCUcggUGUCGUacGGCUCGGccGC-CGCCu -3'
miRNA:   3'- gGUUGG---ACAGCG--UCGAGCU--UGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 22544 0.69 0.628394
Target:  5'- aCCGGCCUGcgcCGCAGCgagcgCGAGCaccgauucgaGCCc -3'
miRNA:   3'- -GGUUGGACa--GCGUCGa----GCUUGag--------CGG- -5'
26328 5' -53.7 NC_005345.2 + 14175 0.69 0.628394
Target:  5'- aCCAugaGCCcGUCGaacccCGGCUUGAGCgUCGUCg -3'
miRNA:   3'- -GGU---UGGaCAGC-----GUCGAGCUUG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 11153 0.69 0.628394
Target:  5'- aCC-ACgUGaUGCcaAGCUCGGcACUCGCCg -3'
miRNA:   3'- -GGuUGgACaGCG--UCGAGCU-UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29734 0.69 0.628394
Target:  5'- aCCGACgCgg-CGCAGCcgacCGAGCUCGgCg -3'
miRNA:   3'- -GGUUG-GacaGCGUCGa---GCUUGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 40386 0.69 0.632837
Target:  5'- cUCAuCCUG-CGCAGCcucccCGAugcugcagucgucgcGCUCGCCa -3'
miRNA:   3'- -GGUuGGACaGCGUCGa----GCU---------------UGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.