Results 61 - 80 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 36798 | 0.69 | 0.639499 |
Target: 5'- aCAGCCgcagCGCAGCUgaCGAAg-CGCCu -3' miRNA: 3'- gGUUGGaca-GCGUCGA--GCUUgaGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 11372 | 0.68 | 0.650598 |
Target: 5'- gCAGCCccgGUCGCGGCcgccugcgggCGAgcaGCUCGaCCu -3' miRNA: 3'- gGUUGGa--CAGCGUCGa---------GCU---UGAGC-GG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 37739 | 0.68 | 0.650598 |
Target: 5'- gCCGGCUggucggcGUCGUcgAGgUCGAgcuGCUCGCCc -3' miRNA: 3'- -GGUUGGa------CAGCG--UCgAGCU---UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 28543 | 0.68 | 0.650598 |
Target: 5'- aCGAUCaGUCGUGGCUCG-GCUcCGCg -3' miRNA: 3'- gGUUGGaCAGCGUCGAGCuUGA-GCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 1336 | 0.68 | 0.650598 |
Target: 5'- gCCGGCCggGUCGCGGU---AACgCGCCu -3' miRNA: 3'- -GGUUGGa-CAGCGUCGagcUUGaGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 4271 | 0.68 | 0.650598 |
Target: 5'- aCCGGCg-GUgcggGCAGCUCGGGCUCGg- -3' miRNA: 3'- -GGUUGgaCAg---CGUCGAGCUUGAGCgg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 26495 | 0.68 | 0.655033 |
Target: 5'- cCCGACC-GUcCGCAGgUCGAccccuugcacccggcACgagCGCCg -3' miRNA: 3'- -GGUUGGaCA-GCGUCgAGCU---------------UGa--GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 31809 | 0.68 | 0.666104 |
Target: 5'- gCCGACCUcgacgacgucgaggcGagGCAGCUggucaaggaCGggUUCGCCc -3' miRNA: 3'- -GGUUGGA---------------CagCGUCGA---------GCuuGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 14367 | 0.68 | 0.672732 |
Target: 5'- gCGACCcGgCGCAGCUCGGcgaccgGCcggUGCCg -3' miRNA: 3'- gGUUGGaCaGCGUCGAGCU------UGa--GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 17485 | 0.68 | 0.672732 |
Target: 5'- gCCGAUCuUGUacgcCGCGGUcaCGAACUCGCa -3' miRNA: 3'- -GGUUGG-ACA----GCGUCGa-GCUUGAGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 2790 | 0.68 | 0.672732 |
Target: 5'- aCGGCUUGUCgGCGccggcgugcGCUCGA--UCGCCu -3' miRNA: 3'- gGUUGGACAG-CGU---------CGAGCUugAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 42350 | 0.68 | 0.680447 |
Target: 5'- gUCAACCgaugauucgcuuccCGCAGCUCGAcaccgacgGCaUCGCCu -3' miRNA: 3'- -GGUUGGaca-----------GCGUCGAGCU--------UG-AGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 18532 | 0.68 | 0.683746 |
Target: 5'- gCCAugugcACCgGUgGgCuGCUCGGggcGCUCGCCg -3' miRNA: 3'- -GGU-----UGGaCAgC-GuCGAGCU---UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 4477 | 0.68 | 0.683746 |
Target: 5'- gCGGCCgUGUC-CGGCUCGAcgaGCcgUGCCc -3' miRNA: 3'- gGUUGG-ACAGcGUCGAGCU---UGa-GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 33036 | 0.68 | 0.683746 |
Target: 5'- gCCGGCCgGcCGCuGCUCacauggcgcGAGCUCGgCg -3' miRNA: 3'- -GGUUGGaCaGCGuCGAG---------CUUGAGCgG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 12983 | 0.68 | 0.683746 |
Target: 5'- aCCAGCUgaacaCGCAGUUCGcGCU-GCCg -3' miRNA: 3'- -GGUUGGaca--GCGUCGAGCuUGAgCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 44176 | 0.68 | 0.69471 |
Target: 5'- cCCAcCCgagGUCGCAGUgCGAGCaCGUg -3' miRNA: 3'- -GGUuGGa--CAGCGUCGaGCUUGaGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 24970 | 0.68 | 0.69471 |
Target: 5'- gCGGCCgGUCGaguGGCaagugcccgucgUCGAgguGCUCGCCg -3' miRNA: 3'- gGUUGGaCAGCg--UCG------------AGCU---UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 6776 | 0.68 | 0.69471 |
Target: 5'- cCCGACCucggcgUGUgGCGGCUgGAG-UCGCa -3' miRNA: 3'- -GGUUGG------ACAgCGUCGAgCUUgAGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 18199 | 0.67 | 0.701259 |
Target: 5'- uCCAaugcACCcgGUCGCGGCcgugcaccgugagCGGGC-CGCCg -3' miRNA: 3'- -GGU----UGGa-CAGCGUCGa------------GCUUGaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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