Results 81 - 100 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26328 | 5' | -53.7 | NC_005345.2 | + | 40767 | 0.67 | 0.705612 |
Target: 5'- uUCGGCCgccgGcCGCGGUUCcacacCUCGCCg -3' miRNA: 3'- -GGUUGGa---CaGCGUCGAGcuu--GAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 30281 | 0.67 | 0.705612 |
Target: 5'- --cACCUGcgcugucgaUCGCGGCcCGcaccuGCUCGCCu -3' miRNA: 3'- gguUGGAC---------AGCGUCGaGCu----UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 7082 | 0.67 | 0.705612 |
Target: 5'- cUCGACgCUGUCGCcgAGCagccgguaacUCGGGCU-GCCg -3' miRNA: 3'- -GGUUG-GACAGCG--UCG----------AGCUUGAgCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 5229 | 0.67 | 0.705612 |
Target: 5'- gCCGGCCUGaUCGCcgacgcGCUgCGcGC-CGCCg -3' miRNA: 3'- -GGUUGGAC-AGCGu-----CGA-GCuUGaGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 22856 | 0.67 | 0.705612 |
Target: 5'- cCCGgucGCCggGUCGguGCgcuucgCGAACUUGUg -3' miRNA: 3'- -GGU---UGGa-CAGCguCGa-----GCUUGAGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 36992 | 0.67 | 0.705612 |
Target: 5'- uCgAACCUGUCG-AGUaCGGGCUCGgUCg -3' miRNA: 3'- -GgUUGGACAGCgUCGaGCUUGAGC-GG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 5847 | 0.67 | 0.705612 |
Target: 5'- uCCGG-CUGUgGC-GCgUCGAcCUCGCCg -3' miRNA: 3'- -GGUUgGACAgCGuCG-AGCUuGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 11553 | 0.67 | 0.705612 |
Target: 5'- aCGACCgcgaaGUUcaucgcccgGCAGCUCGAcgACgggCGCCu -3' miRNA: 3'- gGUUGGa----CAG---------CGUCGAGCU--UGa--GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 8524 | 0.67 | 0.709953 |
Target: 5'- gCUcGCCaUGcCGCGGCUCGcgGagagguacaccccguGCUCGCCg -3' miRNA: 3'- -GGuUGG-ACaGCGUCGAGC--U---------------UGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 19395 | 0.67 | 0.716441 |
Target: 5'- gCCGAgCagcGUCGCgccgAGCUCGGucgGCUgCGCCg -3' miRNA: 3'- -GGUUgGa--CAGCG----UCGAGCU---UGA-GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 46327 | 0.67 | 0.723972 |
Target: 5'- gUCGGCC--UCGCGGCgcuggagcaggcgaUCGAGCgcaCGCCg -3' miRNA: 3'- -GGUUGGacAGCGUCG--------------AGCUUGa--GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 27309 | 0.67 | 0.726115 |
Target: 5'- cCCGcacgcauGCCg--CGCAGCagUCGAugUCGCg -3' miRNA: 3'- -GGU-------UGGacaGCGUCG--AGCUugAGCGg -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 27786 | 0.67 | 0.727185 |
Target: 5'- gCAGCUcgguguaccaguUGUCagGCAGCUCGGAUcgucgaUCGCUg -3' miRNA: 3'- gGUUGG------------ACAG--CGUCGAGCUUG------AGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 32048 | 0.67 | 0.727185 |
Target: 5'- uUCGACCUcggguUCG-AGUUCGGGCUCGaCCu -3' miRNA: 3'- -GGUUGGAc----AGCgUCGAGCUUGAGC-GG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 21521 | 0.67 | 0.727185 |
Target: 5'- gCgGACCgcgaGCAGCggacCGAuCUCGCCg -3' miRNA: 3'- -GgUUGGacagCGUCGa---GCUuGAGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 3879 | 0.67 | 0.727185 |
Target: 5'- gCCGaguGCCUGcagCGCGGCgagggcggggCGGACgUCGUCg -3' miRNA: 3'- -GGU---UGGACa--GCGUCGa---------GCUUG-AGCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 7691 | 0.67 | 0.727185 |
Target: 5'- -uGACUUGaCGCuGCUCGAccGCgagUGCCg -3' miRNA: 3'- ggUUGGACaGCGuCGAGCU--UGa--GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 30113 | 0.67 | 0.733587 |
Target: 5'- gCCGACCcccGUacCGaCGGCUCGGGCggcgacgucgaggCGCCg -3' miRNA: 3'- -GGUUGGa--CA--GC-GUCGAGCUUGa------------GCGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 24924 | 0.67 | 0.737833 |
Target: 5'- cUCGGCgUGUgggaGCAGCcgccgcgaUCGAACUCgGCCc -3' miRNA: 3'- -GGUUGgACAg---CGUCG--------AGCUUGAG-CGG- -5' |
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26328 | 5' | -53.7 | NC_005345.2 | + | 42760 | 0.67 | 0.737833 |
Target: 5'- cCCGGCg-GUUGCcgGGCUUGgAACUCgGCCg -3' miRNA: 3'- -GGUUGgaCAGCG--UCGAGC-UUGAG-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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