miRNA display CGI


Results 101 - 120 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 42760 0.67 0.737833
Target:  5'- cCCGGCg-GUUGCcgGGCUUGgAACUCgGCCg -3'
miRNA:   3'- -GGUUGgaCAGCG--UCGAGC-UUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 17534 0.67 0.748373
Target:  5'- -gGACCgUGUCGCcauGCgauccgCGGGCcgCGCCg -3'
miRNA:   3'- ggUUGG-ACAGCGu--CGa-----GCUUGa-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 44650 0.67 0.748373
Target:  5'- cUCGACCUGcUGCGGUgggcaCG-GCUCGUCg -3'
miRNA:   3'- -GGUUGGACaGCGUCGa----GCuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 23962 0.67 0.748373
Target:  5'- aCCGcggGCugCUGUCGCGGCcgCGAggcuggggcaAgUCGCCg -3'
miRNA:   3'- -GGU---UG--GACAGCGUCGa-GCU----------UgAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 37955 0.67 0.758792
Target:  5'- gCCAcagGCCggcGUCGaccaGGCUgCGGACcugCGCCg -3'
miRNA:   3'- -GGU---UGGa--CAGCg---UCGA-GCUUGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 45327 0.67 0.758792
Target:  5'- gCCGACC--UCGCAGCggaCGAcCgUCGUCg -3'
miRNA:   3'- -GGUUGGacAGCGUCGa--GCUuG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 42649 0.67 0.758792
Target:  5'- uCgAGCCc--UGCGGCguccacgccUCGGGCUCGCCg -3'
miRNA:   3'- -GgUUGGacaGCGUCG---------AGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26751 0.67 0.758792
Target:  5'- aCCGGCCcGUCccguaCAGCUCGAccgaGCCg -3'
miRNA:   3'- -GGUUGGaCAGc----GUCGAGCUugagCGG- -5'
26328 5' -53.7 NC_005345.2 + 23586 0.67 0.758792
Target:  5'- gCGGCUgcggGUCGCGGCguUCGGcGCgaCGCCg -3'
miRNA:   3'- gGUUGGa---CAGCGUCG--AGCU-UGa-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 26588 0.67 0.758792
Target:  5'- -gGGCUcGaaUCGguGCUCGcGCUCGCUg -3'
miRNA:   3'- ggUUGGaC--AGCguCGAGCuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 43504 0.67 0.758792
Target:  5'- gCC-GCCaagGUCGCGGCgaaccCGGcGCUCGCg -3'
miRNA:   3'- -GGuUGGa--CAGCGUCGa----GCU-UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 39048 0.67 0.758792
Target:  5'- aCCGGCCgGUgggcgcuaCGCAgGCggCGAucgaguggacGCUCGCCg -3'
miRNA:   3'- -GGUUGGaCA--------GCGU-CGa-GCU----------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 36618 0.66 0.768057
Target:  5'- gCGGCCgggcucgUGcCGCuGCgCGggUUCGCCa -3'
miRNA:   3'- gGUUGG-------ACaGCGuCGaGCuuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 31601 0.66 0.769079
Target:  5'- uCUGGCCaaUG-CGCAGCUCGGcuUUCGUCc -3'
miRNA:   3'- -GGUUGG--ACaGCGUCGAGCUu-GAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 16998 0.66 0.769079
Target:  5'- aCGAUCUGcCGCuuguGCUUGcuCUuCGCCg -3'
miRNA:   3'- gGUUGGACaGCGu---CGAGCuuGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 26056 0.66 0.769079
Target:  5'- cUCGGCgaG-CGCcuGCUCGAACUgGCUc -3'
miRNA:   3'- -GGUUGgaCaGCGu-CGAGCUUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 34186 0.66 0.769079
Target:  5'- cCCGACCgacugaucacGcCGCGGCgCGAuccUUCGCCg -3'
miRNA:   3'- -GGUUGGa---------CaGCGUCGaGCUu--GAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 6588 0.66 0.769079
Target:  5'- aCCc-CCUGUCGCAGg-CGAACgaGCUg -3'
miRNA:   3'- -GGuuGGACAGCGUCgaGCUUGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 9805 0.66 0.769079
Target:  5'- gCCGcUgUGUCGCGGC-CGGuGC-CGCCg -3'
miRNA:   3'- -GGUuGgACAGCGUCGaGCU-UGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8000 0.66 0.769079
Target:  5'- uUCAACCggcgGcCGCGGUUucaCGAGCUCGaCg -3'
miRNA:   3'- -GGUUGGa---CaGCGUCGA---GCUUGAGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.