miRNA display CGI


Results 121 - 140 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 42686 0.66 0.773155
Target:  5'- cCUGACCUGUgGaugccgggcgcgaccCGGCUgGAuaucggcgaccACUCGCCg -3'
miRNA:   3'- -GGUUGGACAgC---------------GUCGAgCU-----------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 23923 0.66 0.779223
Target:  5'- aCgAGCC-GUCGUgcgugAGCUCGcACUCGgCa -3'
miRNA:   3'- -GgUUGGaCAGCG-----UCGAGCuUGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 3820 0.66 0.779223
Target:  5'- -aGGCCg--CGCAGC---AGCUCGCCg -3'
miRNA:   3'- ggUUGGacaGCGUCGagcUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 10058 0.66 0.779223
Target:  5'- aCCGacgacGCCgacGUCGCGGCgagcguccacUCGA--UCGCCg -3'
miRNA:   3'- -GGU-----UGGa--CAGCGUCG----------AGCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 14533 0.66 0.779223
Target:  5'- cCCGACCgc-CGCAcGCUgGcucCUCGCCc -3'
miRNA:   3'- -GGUUGGacaGCGU-CGAgCuu-GAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8298 0.66 0.78822
Target:  5'- gCCcuCCUGcacgugaUCGCGGCg-GAACuggUCGCCg -3'
miRNA:   3'- -GGuuGGAC-------AGCGUCGagCUUG---AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 29479 0.66 0.789212
Target:  5'- uCCAACUcGUCG-AGCUCGucggCGCUg -3'
miRNA:   3'- -GGUUGGaCAGCgUCGAGCuugaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 24756 0.66 0.789212
Target:  5'- gCguGgCUGUCGCAGCcCGAaguGCgggCGUCg -3'
miRNA:   3'- -GguUgGACAGCGUCGaGCU---UGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 26109 0.66 0.789212
Target:  5'- aCGACCUcGgcgggaUGCAGCuggUCGAGUUCGCCc -3'
miRNA:   3'- gGUUGGA-Ca-----GCGUCG---AGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 7617 0.66 0.789212
Target:  5'- gUCGACCagGUCGCcgagacGCUCGcGCUcCGCg -3'
miRNA:   3'- -GGUUGGa-CAGCGu-----CGAGCuUGA-GCGg -5'
26328 5' -53.7 NC_005345.2 + 42545 0.66 0.789212
Target:  5'- aCCGccGCCgGUCcaCAGCUCG--UUCGCCu -3'
miRNA:   3'- -GGU--UGGaCAGc-GUCGAGCuuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8122 0.66 0.789212
Target:  5'- cCCGGCCgccgucGUCGaCGGCUCuuGGccGCUgCGCCc -3'
miRNA:   3'- -GGUUGGa-----CAGC-GUCGAG--CU--UGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 38307 0.66 0.789212
Target:  5'- uCCGcCCac-CGCAGCUCGGcgccgGCUCGUg -3'
miRNA:   3'- -GGUuGGacaGCGUCGAGCU-----UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 18775 0.66 0.789212
Target:  5'- cUCGACCUG-CGCccGCcgCGGGCU-GCCg -3'
miRNA:   3'- -GGUUGGACaGCGu-CGa-GCUUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 12923 0.66 0.799033
Target:  5'- aCAACCggcaGCAgGCUCGcgGACUgGCCc -3'
miRNA:   3'- gGUUGGacagCGU-CGAGC--UUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 26991 0.66 0.799033
Target:  5'- gCCGGCgCUgcucgccacagcGUCGCGGUagcgcgaccacgUCGAcgagucugugcuGCUCGCCa -3'
miRNA:   3'- -GGUUG-GA------------CAGCGUCG------------AGCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 44982 0.66 0.799033
Target:  5'- cCCGugagcGCCUGcCGCGucgacacccGCUCG-ACgagCGCCg -3'
miRNA:   3'- -GGU-----UGGACaGCGU---------CGAGCuUGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 38547 0.66 0.799033
Target:  5'- aCCGGCCgcGcCGCuGCUCGugccaccGCUCGUa -3'
miRNA:   3'- -GGUUGGa-CaGCGuCGAGCu------UGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 40195 0.66 0.799034
Target:  5'- -aGGCCggcgUGCAGCUCGGcaGCUaCGUCg -3'
miRNA:   3'- ggUUGGaca-GCGUCGAGCU--UGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 25361 0.66 0.799034
Target:  5'- gCCGuCCUGgCGUggcagugccGGCUCGAcgcgaUCGCCg -3'
miRNA:   3'- -GGUuGGACaGCG---------UCGAGCUug---AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.