miRNA display CGI


Results 41 - 60 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 45327 0.67 0.758792
Target:  5'- gCCGACC--UCGCAGCggaCGAcCgUCGUCg -3'
miRNA:   3'- -GGUUGGacAGCGUCGa--GCUuG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 42649 0.67 0.758792
Target:  5'- uCgAGCCc--UGCGGCguccacgccUCGGGCUCGCCg -3'
miRNA:   3'- -GgUUGGacaGCGUCG---------AGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 26751 0.67 0.758792
Target:  5'- aCCGGCCcGUCccguaCAGCUCGAccgaGCCg -3'
miRNA:   3'- -GGUUGGaCAGc----GUCGAGCUugagCGG- -5'
26328 5' -53.7 NC_005345.2 + 23962 0.67 0.748373
Target:  5'- aCCGcggGCugCUGUCGCGGCcgCGAggcuggggcaAgUCGCCg -3'
miRNA:   3'- -GGU---UG--GACAGCGUCGa-GCU----------UgAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 17534 0.67 0.748373
Target:  5'- -gGACCgUGUCGCcauGCgauccgCGGGCcgCGCCg -3'
miRNA:   3'- ggUUGG-ACAGCGu--CGa-----GCUUGa-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 44650 0.67 0.748373
Target:  5'- cUCGACCUGcUGCGGUgggcaCG-GCUCGUCg -3'
miRNA:   3'- -GGUUGGACaGCGUCGa----GCuUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 33566 0.67 0.737833
Target:  5'- -aGGCCUGaaaaccggacUCGCGGCugUCGcGgUCGCCg -3'
miRNA:   3'- ggUUGGAC----------AGCGUCG--AGCuUgAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 24924 0.67 0.737833
Target:  5'- cUCGGCgUGUgggaGCAGCcgccgcgaUCGAACUCgGCCc -3'
miRNA:   3'- -GGUUGgACAg---CGUCG--------AGCUUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 42760 0.67 0.737833
Target:  5'- cCCGGCg-GUUGCcgGGCUUGgAACUCgGCCg -3'
miRNA:   3'- -GGUUGgaCAGCG--UCGAGC-UUGAG-CGG- -5'
26328 5' -53.7 NC_005345.2 + 30113 0.67 0.733587
Target:  5'- gCCGACCcccGUacCGaCGGCUCGGGCggcgacgucgaggCGCCg -3'
miRNA:   3'- -GGUUGGa--CA--GC-GUCGAGCUUGa------------GCGG- -5'
26328 5' -53.7 NC_005345.2 + 3879 0.67 0.727185
Target:  5'- gCCGaguGCCUGcagCGCGGCgagggcggggCGGACgUCGUCg -3'
miRNA:   3'- -GGU---UGGACa--GCGUCGa---------GCUUG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 7691 0.67 0.727185
Target:  5'- -uGACUUGaCGCuGCUCGAccGCgagUGCCg -3'
miRNA:   3'- ggUUGGACaGCGuCGAGCU--UGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 27786 0.67 0.727185
Target:  5'- gCAGCUcgguguaccaguUGUCagGCAGCUCGGAUcgucgaUCGCUg -3'
miRNA:   3'- gGUUGG------------ACAG--CGUCGAGCUUG------AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 32048 0.67 0.727185
Target:  5'- uUCGACCUcggguUCG-AGUUCGGGCUCGaCCu -3'
miRNA:   3'- -GGUUGGAc----AGCgUCGAGCUUGAGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 21521 0.67 0.727185
Target:  5'- gCgGACCgcgaGCAGCggacCGAuCUCGCCg -3'
miRNA:   3'- -GgUUGGacagCGUCGa---GCUuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 27309 0.67 0.726115
Target:  5'- cCCGcacgcauGCCg--CGCAGCagUCGAugUCGCg -3'
miRNA:   3'- -GGU-------UGGacaGCGUCG--AGCUugAGCGg -5'
26328 5' -53.7 NC_005345.2 + 46327 0.67 0.723972
Target:  5'- gUCGGCC--UCGCGGCgcuggagcaggcgaUCGAGCgcaCGCCg -3'
miRNA:   3'- -GGUUGGacAGCGUCG--------------AGCUUGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 19395 0.67 0.716441
Target:  5'- gCCGAgCagcGUCGCgccgAGCUCGGucgGCUgCGCCg -3'
miRNA:   3'- -GGUUgGa--CAGCG----UCGAGCU---UGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 8524 0.67 0.709953
Target:  5'- gCUcGCCaUGcCGCGGCUCGcgGagagguacaccccguGCUCGCCg -3'
miRNA:   3'- -GGuUGG-ACaGCGUCGAGC--U---------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 40767 0.67 0.705612
Target:  5'- uUCGGCCgccgGcCGCGGUUCcacacCUCGCCg -3'
miRNA:   3'- -GGUUGGa---CaGCGUCGAGcuu--GAGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.