miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 36992 0.67 0.705612
Target:  5'- uCgAACCUGUCG-AGUaCGGGCUCGgUCg -3'
miRNA:   3'- -GgUUGGACAGCgUCGaGCUUGAGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 7082 0.67 0.705612
Target:  5'- cUCGACgCUGUCGCcgAGCagccgguaacUCGGGCU-GCCg -3'
miRNA:   3'- -GGUUG-GACAGCG--UCG----------AGCUUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 30281 0.67 0.705612
Target:  5'- --cACCUGcgcugucgaUCGCGGCcCGcaccuGCUCGCCu -3'
miRNA:   3'- gguUGGAC---------AGCGUCGaGCu----UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 22856 0.67 0.705612
Target:  5'- cCCGgucGCCggGUCGguGCgcuucgCGAACUUGUg -3'
miRNA:   3'- -GGU---UGGa-CAGCguCGa-----GCUUGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 11553 0.67 0.705612
Target:  5'- aCGACCgcgaaGUUcaucgcccgGCAGCUCGAcgACgggCGCCu -3'
miRNA:   3'- gGUUGGa----CAG---------CGUCGAGCU--UGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 5847 0.67 0.705612
Target:  5'- uCCGG-CUGUgGC-GCgUCGAcCUCGCCg -3'
miRNA:   3'- -GGUUgGACAgCGuCG-AGCUuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 40767 0.67 0.705612
Target:  5'- uUCGGCCgccgGcCGCGGUUCcacacCUCGCCg -3'
miRNA:   3'- -GGUUGGa---CaGCGUCGAGcuu--GAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 18199 0.67 0.701259
Target:  5'- uCCAaugcACCcgGUCGCGGCcgugcaccgugagCGGGC-CGCCg -3'
miRNA:   3'- -GGU----UGGa-CAGCGUCGa------------GCUUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 6776 0.68 0.69471
Target:  5'- cCCGACCucggcgUGUgGCGGCUgGAG-UCGCa -3'
miRNA:   3'- -GGUUGG------ACAgCGUCGAgCUUgAGCGg -5'
26328 5' -53.7 NC_005345.2 + 24970 0.68 0.69471
Target:  5'- gCGGCCgGUCGaguGGCaagugcccgucgUCGAgguGCUCGCCg -3'
miRNA:   3'- gGUUGGaCAGCg--UCG------------AGCU---UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 44176 0.68 0.69471
Target:  5'- cCCAcCCgagGUCGCAGUgCGAGCaCGUg -3'
miRNA:   3'- -GGUuGGa--CAGCGUCGaGCUUGaGCGg -5'
26328 5' -53.7 NC_005345.2 + 12983 0.68 0.683746
Target:  5'- aCCAGCUgaacaCGCAGUUCGcGCU-GCCg -3'
miRNA:   3'- -GGUUGGaca--GCGUCGAGCuUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 18532 0.68 0.683746
Target:  5'- gCCAugugcACCgGUgGgCuGCUCGGggcGCUCGCCg -3'
miRNA:   3'- -GGU-----UGGaCAgC-GuCGAGCU---UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 4477 0.68 0.683746
Target:  5'- gCGGCCgUGUC-CGGCUCGAcgaGCcgUGCCc -3'
miRNA:   3'- gGUUGG-ACAGcGUCGAGCU---UGa-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 33036 0.68 0.683746
Target:  5'- gCCGGCCgGcCGCuGCUCacauggcgcGAGCUCGgCg -3'
miRNA:   3'- -GGUUGGaCaGCGuCGAG---------CUUGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 42350 0.68 0.680447
Target:  5'- gUCAACCgaugauucgcuuccCGCAGCUCGAcaccgacgGCaUCGCCu -3'
miRNA:   3'- -GGUUGGaca-----------GCGUCGAGCU--------UG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 2790 0.68 0.672732
Target:  5'- aCGGCUUGUCgGCGccggcgugcGCUCGA--UCGCCu -3'
miRNA:   3'- gGUUGGACAG-CGU---------CGAGCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 17485 0.68 0.672732
Target:  5'- gCCGAUCuUGUacgcCGCGGUcaCGAACUCGCa -3'
miRNA:   3'- -GGUUGG-ACA----GCGUCGa-GCUUGAGCGg -5'
26328 5' -53.7 NC_005345.2 + 14367 0.68 0.672732
Target:  5'- gCGACCcGgCGCAGCUCGGcgaccgGCcggUGCCg -3'
miRNA:   3'- gGUUGGaCaGCGUCGAGCU------UGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 31809 0.68 0.666104
Target:  5'- gCCGACCUcgacgacgucgaggcGagGCAGCUggucaaggaCGggUUCGCCc -3'
miRNA:   3'- -GGUUGGA---------------CagCGUCGA---------GCuuGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.