miRNA display CGI


Results 1 - 20 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 620 1.15 0.000522
Target:  5'- aCCAACCUGUCGCAGCUCGAACUCGCCa -3'
miRNA:   3'- -GGUUGGACAGCGUCGAGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 1336 0.68 0.650598
Target:  5'- gCCGGCCggGUCGCGGU---AACgCGCCu -3'
miRNA:   3'- -GGUUGGa-CAGCGUCGagcUUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 2471 0.71 0.477281
Target:  5'- cCCAGuCCUGcgCGCgagcgAGCUCGAugUacaCGCCg -3'
miRNA:   3'- -GGUU-GGACa-GCG-----UCGAGCUugA---GCGG- -5'
26328 5' -53.7 NC_005345.2 + 2790 0.68 0.672732
Target:  5'- aCGGCUUGUCgGCGccggcgugcGCUCGA--UCGCCu -3'
miRNA:   3'- gGUUGGACAG-CGU---------CGAGCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 3144 0.73 0.390047
Target:  5'- aCAGCCgUGcCGaCGGCgucggCGAGCUCGUCg -3'
miRNA:   3'- gGUUGG-ACaGC-GUCGa----GCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 3820 0.66 0.779223
Target:  5'- -aGGCCg--CGCAGC---AGCUCGCCg -3'
miRNA:   3'- ggUUGGacaGCGUCGagcUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 3879 0.67 0.727185
Target:  5'- gCCGaguGCCUGcagCGCGGCgagggcggggCGGACgUCGUCg -3'
miRNA:   3'- -GGU---UGGACa--GCGUCGa---------GCUUG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 4271 0.68 0.650598
Target:  5'- aCCGGCg-GUgcggGCAGCUCGGGCUCGg- -3'
miRNA:   3'- -GGUUGgaCAg---CGUCGAGCUUGAGCgg -5'
26328 5' -53.7 NC_005345.2 + 4477 0.68 0.683746
Target:  5'- gCGGCCgUGUC-CGGCUCGAcgaGCcgUGCCc -3'
miRNA:   3'- gGUUGG-ACAGcGUCGAGCU---UGa-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 4970 0.71 0.51904
Target:  5'- uCCuGCggUGUCGCGGC-CGAucggacgaacgcGCUCGCCa -3'
miRNA:   3'- -GGuUGg-ACAGCGUCGaGCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 5165 0.72 0.417972
Target:  5'- gCGACUcGUCGCcGCccUCGAagGCUCGCCc -3'
miRNA:   3'- gGUUGGaCAGCGuCG--AGCU--UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 5229 0.67 0.705612
Target:  5'- gCCGGCCUGaUCGCcgacgcGCUgCGcGC-CGCCg -3'
miRNA:   3'- -GGUUGGAC-AGCGu-----CGA-GCuUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 5680 0.81 0.126274
Target:  5'- gCCGACCg--CGCuGCgccgCGAACUCGCCg -3'
miRNA:   3'- -GGUUGGacaGCGuCGa---GCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 5733 0.7 0.528639
Target:  5'- gCCGGCCgUGUuccgggcCGCAGCcgaGGACUgCGCCg -3'
miRNA:   3'- -GGUUGG-ACA-------GCGUCGag-CUUGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 5847 0.67 0.705612
Target:  5'- uCCGG-CUGUgGC-GCgUCGAcCUCGCCg -3'
miRNA:   3'- -GGUUgGACAgCGuCG-AGCUuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 6588 0.66 0.769079
Target:  5'- aCCc-CCUGUCGCAGg-CGAACgaGCUg -3'
miRNA:   3'- -GGuuGGACAGCGUCgaGCUUGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 6776 0.68 0.69471
Target:  5'- cCCGACCucggcgUGUgGCGGCUgGAG-UCGCa -3'
miRNA:   3'- -GGUUGG------ACAgCGUCGAgCUUgAGCGg -5'
26328 5' -53.7 NC_005345.2 + 7082 0.67 0.705612
Target:  5'- cUCGACgCUGUCGCcgAGCagccgguaacUCGGGCU-GCCg -3'
miRNA:   3'- -GGUUG-GACAGCG--UCG----------AGCUUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 7617 0.66 0.789212
Target:  5'- gUCGACCagGUCGCcgagacGCUCGcGCUcCGCg -3'
miRNA:   3'- -GGUUGGa-CAGCGu-----CGAGCuUGA-GCGg -5'
26328 5' -53.7 NC_005345.2 + 7691 0.67 0.727185
Target:  5'- -uGACUUGaCGCuGCUCGAccGCgagUGCCg -3'
miRNA:   3'- ggUUGGACaGCGuCGAGCU--UGa--GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.