miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26328 5' -53.7 NC_005345.2 + 8000 0.66 0.769079
Target:  5'- uUCAACCggcgGcCGCGGUUucaCGAGCUCGaCg -3'
miRNA:   3'- -GGUUGGa---CaGCGUCGA---GCUUGAGCgG- -5'
26328 5' -53.7 NC_005345.2 + 8036 0.73 0.372121
Target:  5'- cUCGACCUcgCGCAGCUgcaCGAgcugcagaucaaGCUCGCCg -3'
miRNA:   3'- -GGUUGGAcaGCGUCGA---GCU------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8122 0.66 0.789212
Target:  5'- cCCGGCCgccgucGUCGaCGGCUCuuGGccGCUgCGCCc -3'
miRNA:   3'- -GGUUGGa-----CAGC-GUCGAG--CU--UGA-GCGG- -5'
26328 5' -53.7 NC_005345.2 + 8298 0.66 0.78822
Target:  5'- gCCcuCCUGcacgugaUCGCGGCg-GAACuggUCGCCg -3'
miRNA:   3'- -GGuuGGAC-------AGCGUCGagCUUG---AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8524 0.67 0.709953
Target:  5'- gCUcGCCaUGcCGCGGCUCGcgGagagguacaccccguGCUCGCCg -3'
miRNA:   3'- -GGuUGG-ACaGCGUCGAGC--U---------------UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8659 0.72 0.417972
Target:  5'- gCCGAUC-GUCGCGGCgau--CUCGCCg -3'
miRNA:   3'- -GGUUGGaCAGCGUCGagcuuGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 8968 0.7 0.573111
Target:  5'- cUCGACCUGUCGCuccGUcgaCGGGCgugUGCCu -3'
miRNA:   3'- -GGUUGGACAGCGu--CGa--GCUUGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 8971 0.7 0.584104
Target:  5'- gCCGGCCUcGaUCGCAGCU---GCgCGCCg -3'
miRNA:   3'- -GGUUGGA-C-AGCGUCGAgcuUGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 9424 0.77 0.230689
Target:  5'- aCCGGCUgucaaaggUGUCGUGGCcCGAGCUCGUCc -3'
miRNA:   3'- -GGUUGG--------ACAGCGUCGaGCUUGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 9805 0.66 0.769079
Target:  5'- gCCGcUgUGUCGCGGC-CGGuGC-CGCCg -3'
miRNA:   3'- -GGUuGgACAGCGUCGaGCU-UGaGCGG- -5'
26328 5' -53.7 NC_005345.2 + 10058 0.66 0.779223
Target:  5'- aCCGacgacGCCgacGUCGCGGCgagcguccacUCGA--UCGCCg -3'
miRNA:   3'- -GGU-----UGGa--CAGCGUCG----------AGCUugAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 10704 0.75 0.313916
Target:  5'- cCCGGCCUGUCcugcgGCAGCUCGu-Cg-GCCg -3'
miRNA:   3'- -GGUUGGACAG-----CGUCGAGCuuGagCGG- -5'
26328 5' -53.7 NC_005345.2 + 11153 0.69 0.628394
Target:  5'- aCC-ACgUGaUGCcaAGCUCGGcACUCGCCg -3'
miRNA:   3'- -GGuUGgACaGCG--UCGAGCU-UGAGCGG- -5'
26328 5' -53.7 NC_005345.2 + 11342 0.66 0.808678
Target:  5'- uCCGGCC-GUUGguGC-CGAGCagcagCGUCg -3'
miRNA:   3'- -GGUUGGaCAGCguCGaGCUUGa----GCGG- -5'
26328 5' -53.7 NC_005345.2 + 11372 0.68 0.650598
Target:  5'- gCAGCCccgGUCGCGGCcgccugcgggCGAgcaGCUCGaCCu -3'
miRNA:   3'- gGUUGGa--CAGCGUCGa---------GCU---UGAGC-GG- -5'
26328 5' -53.7 NC_005345.2 + 11553 0.67 0.705612
Target:  5'- aCGACCgcgaaGUUcaucgcccgGCAGCUCGAcgACgggCGCCu -3'
miRNA:   3'- gGUUGGa----CAG---------CGUCGAGCU--UGa--GCGG- -5'
26328 5' -53.7 NC_005345.2 + 12923 0.66 0.799033
Target:  5'- aCAACCggcaGCAgGCUCGcgGACUgGCCc -3'
miRNA:   3'- gGUUGGacagCGU-CGAGC--UUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 12983 0.68 0.683746
Target:  5'- aCCAGCUgaacaCGCAGUUCGcGCU-GCCg -3'
miRNA:   3'- -GGUUGGaca--GCGUCGAGCuUGAgCGG- -5'
26328 5' -53.7 NC_005345.2 + 14175 0.69 0.628394
Target:  5'- aCCAugaGCCcGUCGaacccCGGCUUGAGCgUCGUCg -3'
miRNA:   3'- -GGU---UGGaCAGC-----GUCGAGCUUG-AGCGG- -5'
26328 5' -53.7 NC_005345.2 + 14367 0.68 0.672732
Target:  5'- gCGACCcGgCGCAGCUCGGcgaccgGCcggUGCCg -3'
miRNA:   3'- gGUUGGaCaGCGUCGAGCU------UGa--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.